Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006006.1 Corchorus capsularis cultivar CVL-1 contig06024, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20600

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
695--1022
50
6.7
51
74
12
269
40
4
16
38
1.68
742--1016
90
2.9
90
88
6
361
40
4
17
38
1.68
854--1022
51
3.3
51
80
4
207
40
3
17
38
1.67
715--973
140
1.9
140
78
6
292
39
3
16
39
1.67
832--1016
102
1.8
101
90
1
298
42
4
16
37
1.68
832--1029
101
2.0
101
87
2
290
42
4
15
37
1.68
1840--2036
55
3.6
54
88
3
279
49
11
16
22
1.77
1975--2130
71
2.2
71
82
8
176
50
8
16
25
1.73
2249--2288
14
2.9
14
84
0
53
52
2
22
22
1.59
2263--2390
35
3.6
35
86
2
157
55
3
23
17
1.56
2428--2466
20
2.0
20
89
0
60
56
5
15
23
1.59
2421--2574
22
7.2
21
78
10
118
53
6
19
20
1.67
2445--2541
21
4.5
21
84
2
113
50
7
20
21
1.72
2512--2597
44
1.9
45
81
6
104
51
4
22
22
1.66
2585--2625
14
2.9
15
82
10
50
56
7
17
19
1.64
2683--2742
27
2.2
28
79
5
79
61
0
21
16
1.34
3173--3222
26
1.9
26
91
0
82
18
40
28
14
1.89
3532--3563
16
2.0
16
100
0
64
37
0
12
50
1.41
4843--4909
31
2.2
31
86
7
93
32
13
22
31
1.92
18696--18813
62
1.9
62
87
0
173
28
22
20
27
1.99
19324--19365
12
3.4
12
86
3
57
59
14
0
26
1.35

Tables:   1

The End!