Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006007.1 Corchorus capsularis cultivar CVL-1 contig06025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17006
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33


Found at i:12201 original size:33 final size:33

Alignment explanation


    Indices: 12159--12225  Score: 134
    Period size: 33  Copynumber: 2.0  Consensus size: 33

      12149 CAGAGGGAGT

                                             
      12159 ACTATTTGGAGATTTGGTTACACCCTTGAGGCC
          1 ACTATTTGGAGATTTGGTTACACCCTTGAGGCC

                                             
      12192 ACTATTTGGAGATTTGGTTACACCCTTGAGGCC
          1 ACTATTTGGAGATTTGGTTACACCCTTGAGGCC

             
      12225 A
          1 A

      12226 AAGATGGCTA


Statistics
Matches: 34,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   34  1.00

ACGTcount: A:0.22, C:0.21, G:0.24, T:0.33


Consensus pattern (33 bp):   
ACTATTTGGAGATTTGGTTACACCCTTGAGGCC
Done.