Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006015.1 Corchorus capsularis cultivar CVL-1 contig06033, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5764
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33


Found at i:2879 original size:30 final size:30

Alignment explanation


    Indices: 2843--2902  Score: 93
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       2833 TCCATGAAAT

                    *        *            
       2843 TCAATTTTGGACATTTTGCCCACTGAACTC
          1 TCAATTTTAGACATTTTCCCCACTGAACTC

                                  *       
       2873 TCAATTTTAGACATTTTCCCCATTGAACTC
          1 TCAATTTTAGACATTTTCCCCACTGAACTC

       2903 GATTTGAGCC


Statistics
Matches: 27,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   27  1.00

ACGTcount: A:0.25, C:0.27, G:0.10, T:0.38


Consensus pattern (30 bp):   
TCAATTTTAGACATTTTCCCCACTGAACTC

Found at i:5254 original size:18 final size:18

Alignment explanation


    Indices: 5231--5269  Score: 78
    Period size: 18  Copynumber: 2.2  Consensus size: 18

       5221 GAAACTTTAC

                              
       5231 ATGCTCCAAATTTAGGTT
          1 ATGCTCCAAATTTAGGTT

                              
       5249 ATGCTCCAAATTTAGGTT
          1 ATGCTCCAAATTTAGGTT

               
       5267 ATG
          1 ATG

       5270 TTTGGTATTG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.28, C:0.15, G:0.18, T:0.38


Consensus pattern (18 bp):   
ATGCTCCAAATTTAGGTT
Done.