Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006016.1 Corchorus capsularis cultivar CVL-1 contig06034, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26200

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
399--565
84
2.0
84
98
0
325
41
19
7
31
1.79
2074--2122
25
2.0
25
84
8
64
40
2
0
57
1.10
2443--2477
12
2.9
12
91
0
61
31
17
8
42
1.79
6261--6430
40
4.2
41
82
6
220
34
14
16
34
1.89
6268--6434
42
4.1
41
81
4
203
34
14
16
33
1.90
6937--6998
29
2.2
29
97
2
117
62
12
12
11
1.54
8425--8454
2
15.0
2
100
0
60
50
0
0
50
1.00
11505--11555
22
2.3
22
75
3
57
25
13
5
54
1.61
18707--18739
15
2.3
15
89
5
50
57
6
9
27
1.53
18760--18792
6
5.5
6
100
0
66
54
15
0
30
1.41
18789--18833
13
3.5
13
90
3
74
55
8
13
22
1.65
18789--18841
25
2.1
25
89
6
81
58
9
11
20
1.60
20021--20047
13
2.1
13
100
0
54
14
7
33
44
1.73
25904--25942
12
3.2
12
88
3
51
64
10
7
17
1.48

Tables:   1

The End!