Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006017.1 Corchorus capsularis cultivar CVL-1 contig06035, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40894

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4967--4996
12
2.5
12
100
0
60
36
0
20
43
1.52
5253--5283
16
1.9
16
93
0
53
29
12
3
54
1.53
6166--6215
21
2.4
21
81
15
59
34
10
6
50
1.60
6251--6519
91
3.0
91
97
0
502
33
11
7
48
1.67
6611--6654
22
2.0
22
86
8
63
25
9
15
50
1.74
6611--6665
21
2.5
23
82
8
62
29
9
14
47
1.75
7083--7121
20
2.0
20
84
0
51
33
7
7
51
1.59
7253--7310
21
2.9
21
82
5
75
34
10
12
43
1.76
13147--13177
2
15.0
2
93
6
53
48
0
3
48
1.17
24220--24259
19
2.2
18
86
4
53
30
20
5
45
1.72
30601--30649
24
2.0
24
84
7
64
22
22
16
38
1.92
34295--34954
35
18.8
34
82
6
692
24
22
10
42
1.85
34320--34918
70
8.5
69
88
4
867
25
22
10
42
1.84
34320--34954
141
4.5
139
87
4
889
25
22
10
42
1.85
34956--35137
11
16.6
11
75
6
138
21
18
10
48
1.78
34956--35137
22
8.3
22
77
8
165
21
18
10
48
1.78
34954--35139
33
5.7
33
81
1
203
23
17
10
48
1.78
35259--35346
40
2.2
40
87
4
124
25
12
13
48
1.77
35350--35435
40
2.1
41
82
4
104
27
23
8
40
1.83
38528--38609
41
2.0
41
100
0
164
24
17
9
48
1.76
38916--38948
16
2.1
16
100
0
66
57
18
6
18
1.60
40308--40363
31
1.9
29
82
13
71
39
16
21
23
1.92

Tables:   1

The End!