Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006021.1 Corchorus capsularis cultivar CVL-1 contig06039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2114
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31


Found at i:1214 original size:75 final size:75

Alignment explanation


    Indices: 1091--1255  Score: 330
    Period size: 75  Copynumber: 2.2  Consensus size: 75

       1081 TTTGATCTAG

                                                                             
       1091 AAGGGGTCTCGGGTTGTTATACCGGTGAATGTCGTCGAATCGGTGATTTGAGGGTTACGGGTTGG
          1 AAGGGGTCTCGGGTTGTTATACCGGTGAATGTCGTCGAATCGGTGATTTGAGGGTTACGGGTTGG

                      
       1156 TTAGTTCAAA
         66 TTAGTTCAAA

                                                                             
       1166 AAGGGGTCTCGGGTTGTTATACCGGTGAATGTCGTCGAATCGGTGATTTGAGGGTTACGGGTTGG
          1 AAGGGGTCTCGGGTTGTTATACCGGTGAATGTCGTCGAATCGGTGATTTGAGGGTTACGGGTTGG

                      
       1231 TTAGTTCAAA
         66 TTAGTTCAAA

                           
       1241 AAGGGGTCTCGGGTT
          1 AAGGGGTCTCGGGTT

       1256 TTGAAGAAAG


Statistics
Matches: 90,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  75   90  1.00

ACGTcount: A:0.19, C:0.12, G:0.37, T:0.32


Consensus pattern (75 bp):   
AAGGGGTCTCGGGTTGTTATACCGGTGAATGTCGTCGAATCGGTGATTTGAGGGTTACGGGTTGG
TTAGTTCAAA
Done.