Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006025.1 Corchorus capsularis cultivar CVL-1 contig06043, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32550

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
773--1075
8
40.6
8
69
17
75
42
4
21
31
1.72
773--909
22
6.2
22
79
6
143
43
2
23
29
1.68
731--901
66
2.6
64
78
6
173
45
4
21
28
1.70
780--1081
44
6.8
43
72
16
142
43
4
20
31
1.71
997--1090
22
4.3
23
77
14
108
46
4
20
28
1.69
1018--1082
14
4.5
14
70
21
53
47
3
18
30
1.64
1010--1113
44
2.4
44
83
6
122
48
5
18
27
1.71
1199--1329
58
2.3
57
81
7
140
41
11
24
22
1.87
1310--1384
24
3.1
24
76
1
69
49
5
21
24
1.70
1432--1520
22
4.1
22
78
11
103
47
4
22
25
1.70
1442--1475
14
2.4
14
90
0
59
47
0
20
32
1.51
1432--1511
42
1.9
42
85
10
110
46
3
22
27
1.69
1541--1571
16
1.9
16
93
0
53
41
0
29
29
1.56
2509--2549
8
5.2
8
85
14
59
12
9
0
78
0.98
2502--2549
22
2.2
22
85
3
62
12
12
0
75
1.06
2509--2555
16
2.9
17
78
21
64
12
10
0
76
1.02
2515--2548
7
4.7
7
88
3
50
11
8
0
79
0.94
2869--2896
6
4.7
6
100
0
56
14
0
14
71
1.15
3224--3257
14
2.5
14
95
4
61
41
5
8
44
1.60
3326--3352
11
2.5
11
100
0
54
14
14
0
70
1.17
5187--5222
19
1.9
18
88
5
54
33
22
2
41
1.68
11681--11710
14
2.1
14
100
0
60
33
20
16
30
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
12374--12447
22
3.4
22
78
0
85
36
13
14
35
1.86
12436--12479
22
2.0
22
82
8
54
47
13
4
34
1.63
12595--12654
22
2.7
21
85
10
75
35
23
1
40
1.65
12602--12671
22
3.2
22
83
0
86
37
20
5
37
1.76
12698--12885
22
8.5
22
69
14
93
32
10
12
43
1.77
12698--12887
44
4.3
43
76
5
157
32
10
13
43
1.78
12698--12867
66
2.6
65
82
9
184
34
10
12
41
1.78
13998--14134
67
2.0
68
90
2
213
24
23
10
41
1.85
16129--16170
9
4.2
10
82
17
52
66
0
0
33
0.92
16125--16172
19
2.5
19
80
6
53
68
0
0
31
0.90
16154--16260
29
3.7
29
71
15
78
54
0
3
42
1.18
20469--20545
29
2.6
29
80
10
84
35
23
12
28
1.92
22979--23013
17
2.1
17
100
0
70
37
0
22
40
1.55
26761--26811
21
2.4
21
86
3
75
23
29
7
39
1.83

Tables:   1

The End!