Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006036.1 Corchorus capsularis cultivar CVL-1 contig06054, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  7793

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
580--660
40
2.0
40
87
0
117
41
17
13
27
1.87
1113--1139
2
13.5
2
100
0
54
48
0
0
51
1.00
2966--3081
53
2.2
53
87
0
160
19
15
25
38
1.91
3421--3476
16
3.6
15
76
13
60
8
16
33
41
1.79
3450--3499
23
2.2
23
85
3
66
6
18
40
36
1.75
3471--3546
16
4.8
16
71
9
57
9
19
36
34
1.84
3423--3532
54
2.0
54
84
8
143
9
17
35
38
1.81
3439--3515
39
2.0
38
84
2
100
9
18
36
36
1.82
3473--3546
32
2.3
31
84
6
94
9
18
36
35
1.84
3567--3600
16
2.1
16
94
0
59
8
14
35
41
1.77
4359--4494
16
8.5
16
78
6
141
9
22
35
33
1.86
4376--4494
32
3.7
31
87
6
168
9
23
36
31
1.86
4357--4494
48
2.9
48
78
16
160
9
22
34
33
1.86
4375--4508
16
8.5
15
77
16
96
8
23
38
29
1.84
4721--4959
54
4.4
54
84
3
284
20
29
27
22
1.98
4721--4959
108
2.2
107
89
1
352
20
29
27
22
1.98
4923--5035
38
3.0
38
92
0
181
24
27
30
16
1.97
5322--5545
76
2.9
76
85
0
304
20
24
31
24
1.98
7102--7144
11
3.9
11
90
0
68
46
6
4
41
1.51
7098--7144
22
2.1
22
96
0
85
46
6
4
42
1.48

Tables:   1

The End!