genome.fa.s6038.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006038.1 Corchorus capsularis cultivar CVL-1 contig06056, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31821

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6186--6387	7	28.7	7	64	17	53	19	23	2	53	1.57
6185--6391	35	6.1	35	81	6	198	20	23	2	53	1.59
6185--6391	69	3.0	67	83	11	219	20	23	2	53	1.59
6284--6375	13	6.6	14	73	12	57	20	22	3	53	1.60
6500--6549	16	3.4	16	71	25	56	12	22	10	56	1.65
6463--6593	27	4.9	27	82	12	157	15	20	7	56	1.63
9984--10033	26	2.0	26	92	4	84	62	6	18	14	1.51
10922--11347	69	6.2	69	90	3	639	27	18	29	24	1.98
10930--11347	139	3.1	138	90	3	641	28	18	29	24	1.98
10922--11347	208	2.1	202	89	3	656	27	18	29	24	1.98
11862--11965	51	2.0	51	86	0	145	40	12	14	32	1.83
12830--12854	12	2.1	12	100	0	50	0	16	0	84	0.63
15992--16059	35	1.9	36	87	3	102	19	20	5	54	1.64
16090--16175	7	12.1	7	71	2	64	17	22	3	56	1.55
16090--16168	14	5.6	14	76	8	88	17	22	3	55	1.58
16163--16295	22	6.1	22	80	6	155	21	18	2	57	1.51
16135--16310	86	2.1	85	89	5	266	21	19	2	57	1.52
16286--16447	35	4.6	35	80	5	152	20	22	3	53	1.62
16511--16650	26	5.3	27	70	16	114	15	20	8	55	1.66
16521--16648	53	2.4	53	94	0	220	15	20	7	56	1.64
16521--16649	27	4.9	27	80	15	153	15	20	7	56	1.63
20705--20746	10	3.8	12	76	23	56	23	4	4	66	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20704--20747	20	2.1	22	91	8	74	25	4	4	65	1.30
20715--20754	20	2.0	20	90	0	62	17	5	10	67	1.37
22289--22315	6	4.5	6	100	0	54	29	0	14	55	1.40
22522--22667	57	2.6	57	97	0	274	26	22	15	35	1.94
22522--23056	63	8.7	62	85	5	533	24	20	15	39	1.91
22522--23281	191	4.2	186	76	14	670	23	20	15	39	1.91
23001--23098	45	2.2	46	88	1	144	19	21	17	41	1.90
22945--23164	108	2.0	108	97	0	413	21	22	15	40	1.91
23047--23280	58	4.0	58	82	5	274	22	20	15	41	1.90
23514--23587	27	2.8	26	87	4	112	17	14	22	44	1.86
23944--23977	14	2.4	14	95	0	59	23	11	14	50	1.76
24118--24156	20	2.0	20	89	0	60	28	10	20	41	1.85
29257--29293	19	2.0	18	89	5	56	40	5	21	32	1.76

Tables:   1

The End!