Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006040.1 Corchorus capsularis cultivar CVL-1 contig06058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19351

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
640--675
6
6.0
6
100
0
72
0
33
16
50
1.46
14253--14409
68
2.3
69
84
2
208
49
16
12
22
1.79
16593--16817
27
8.0
28
77
12
210
19
22
3
55
1.57
16593--16789
58
3.4
59
78
11
221
19
22
3
54
1.57
16593--16742
55
2.7
54
82
12
153
18
24
2
55
1.55
16599--16817
114
1.9
114
85
4
300
19
21
3
55
1.57
16801--16845
21
2.1
21
83
0
54
26
22
2
48
1.62
16602--16845
113
2.2
112
81
7
271
20
22
2
54
1.57
16820--17076
29
8.9
29
74
10
106
20
22
3
53
1.59
16807--17097
36
8.5
36
82
13
355
20
23
2
53
1.58
17012--17089
29
2.7
29
86
7
106
20
23
2
53
1.57
17121--17209
40
2.2
40
84
7
110
21
24
4
49
1.68
17192--17451
32
7.8
32
69
19
126
20
23
2
52
1.59
17152--17371
72
3.2
70
73
18
183
20
22
3
53
1.59
17382--17465
16
5.1
16
69
28
61
19
29
2
48
1.61
17302--17465
65
2.5
65
86
2
206
20
25
2
52
1.58

Tables:   1

The End!