Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006042.1 Corchorus capsularis cultivar CVL-1 contig06060, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5128
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30


Found at i:4304 original size:45 final size:45

Alignment explanation


    Indices: 4240--4325  Score: 163
    Period size: 45  Copynumber: 1.9  Consensus size: 45

       4230 TTCTTCAAAT

                  *                                      
       4240 AAGAACGTGGGTGGTTACCTCATTCTTGATGAAGTAACTGCTTTG
          1 AAGAACATGGGTGGTTACCTCATTCTTGATGAAGTAACTGCTTTG

                                                     
       4285 AAGAACATGGGTGGTTACCTCATTCTTGATGAAGTAACTGC
          1 AAGAACATGGGTGGTTACCTCATTCTTGATGAAGTAACTGC

       4326 CTATTGGCTT


Statistics
Matches: 40,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  45   40  1.00

ACGTcount: A:0.27, C:0.16, G:0.26, T:0.31


Consensus pattern (45 bp):   
AAGAACATGGGTGGTTACCTCATTCTTGATGAAGTAACTGCTTTG
Done.