Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006049.1 Corchorus capsularis cultivar CVL-1 contig06067, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4225
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:3621 original size:33 final size:33

Alignment explanation


    Indices: 3576--3661  Score: 154
    Period size: 33  Copynumber: 2.6  Consensus size: 33

       3566 TCTTGTTAGA

                                         *   
       3576 TGAAAATAATTCTGTTTTGGTTGATCATAGCAT
          1 TGAAAATAATTCTGTTTTGGTTGATCATAACAT

              *                              
       3609 TGCAAATAATTCTGTTTTGGTTGATCATAACAT
          1 TGAAAATAATTCTGTTTTGGTTGATCATAACAT

                                
       3642 TGAAAATAATTCTGTTTTGG
          1 TGAAAATAATTCTGTTTTGG

       3662 ATGAAAAGAA


Statistics
Matches: 50,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   50  1.00

ACGTcount: A:0.30, C:0.09, G:0.17, T:0.43


Consensus pattern (33 bp):   
TGAAAATAATTCTGTTTTGGTTGATCATAACAT
Done.