Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006050.1 Corchorus capsularis cultivar CVL-1 contig06068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3860
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Found at i:1551 original size:13 final size:13
Alignment explanation
Indices: 1535--1563 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1525 AATTTTTCAA
1535 TTTTTTTG-ATTT
1 TTTTTTTGTATTT
1547 TTTTTTTGTATTT
1 TTTTTTTGTATTT
1560 TTTT
1 TTTT
1564 GCAAAATGTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.07, C:0.00, G:0.07, T:0.86
Consensus pattern (13 bp):
TTTTTTTGTATTT
Found at i:2160 original size:8 final size:8
Alignment explanation
Indices: 2149--2219 Score: 72
Period size: 8 Copynumber: 8.9 Consensus size: 8
2139 GGTACTGAGA
2149 AATTGAAT
1 AATTGAAT
2157 AATTGAAT
1 AATTGAAT
*
2165 AATTGAAG
1 AATTGAAT
*
2173 CATTGAAT
1 AATTGAAT
**
2181 AATTGAGG
1 AATTGAAT
2189 AATTGAA-
1 AATTGAAT
* *
2196 ACATGGAGT
1 A-ATTGAAT
2205 AATTGAAT
1 AATTGAAT
2213 AATTGAA
1 AATTGAA
2220 GAAAGACCAC
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
7 1 0.02
8 48 0.96
9 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.20, T:0.31
Consensus pattern (8 bp):
AATTGAAT
Found at i:2168 original size:16 final size:16
Alignment explanation
Indices: 2149--2222 Score: 80
Period size: 16 Copynumber: 4.6 Consensus size: 16
2139 GGTACTGAGA
*
2149 AATTGAATAATTGAAT
1 AATTGAAGAATTGAAT
*
2165 AATTGAAGCATTGAAT
1 AATTGAAGAATTGAAT
*
2181 AATTGAGGAATTGAA-
1 AATTGAAGAATTGAAT
*
2196 ACA-TGGAGTAATTGAAT
1 A-ATTGAAG-AATTGAAT
2213 AATTGAAGAA
1 AATTGAAGAA
2223 AGACCACCCT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
15 4 0.09
16 38 0.81
17 5 0.11
ACGTcount: A:0.47, C:0.03, G:0.20, T:0.30
Consensus pattern (16 bp):
AATTGAAGAATTGAAT
Found at i:2177 original size:24 final size:24
Alignment explanation
Indices: 2150--2220 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
2140 GTACTGAGAA
2150 ATTGAATAATTGAATAATTGAAGC
1 ATTGAATAATTGAATAATTGAAGC
** *
2174 ATTGAATAATTGAGGAATTGAAAC
1 ATTGAATAATTGAATAATTGAAGC
* *
2198 ATGGAGTAATTGAATAATTGAAG
1 ATTGAATAATTGAATAATTGAAG
2221 AAAGACCACC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 39 1.00
ACGTcount: A:0.45, C:0.03, G:0.21, T:0.31
Consensus pattern (24 bp):
ATTGAATAATTGAATAATTGAAGC
Found at i:2312 original size:8 final size:8
Alignment explanation
Indices: 2301--2441 Score: 56
Period size: 8 Copynumber: 18.8 Consensus size: 8
2291 AAATTGTAAC
2301 ATTGAAGA
1 ATTGAAGA
2309 ATTG-A-A
1 ATTGAAGA
2315 ATTGAA-A
1 ATTGAAGA
*
2322 CATTGAAGG
1 -ATTGAAGA
2331 ATTG-A-A
1 ATTGAAGA
*
2337 TTTGAAGA
1 ATTGAAGA
*
2345 ATAG-A-A
1 ATTGAAGA
*
2351 ATTGAAGC
1 ATTGAAGA
2359 ATTGAAGA
1 ATTGAAGA
*
2367 A-T-AGGA
1 ATTGAAGA
*
2373 ATAGAA-A
1 ATTGAAGA
*
2380 TATTGAAGG
1 -ATTGAAGA
2389 ATTG-A-A
1 ATTGAAGA
*
2395 TTTGAAGA
1 ATTGAAGA
* *
2403 TTTGAAATA
1 ATTG-AAGA
*
2412 ATTGAAGC
1 ATTGAAGA
2420 ATTGAA-A
1 ATTGAAGA
2427 CATTGAAGA
1 -ATTGAAGA
2436 ATTGAA
1 ATTGAA
2442 CTTGAAACAT
Statistics
Matches: 97, Mismatches: 20, Indels: 32
0.65 0.13 0.21
Matches are distributed among these distances:
6 19 0.20
7 11 0.11
8 60 0.62
9 7 0.07
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.28
Consensus pattern (8 bp):
ATTGAAGA
Found at i:2312 original size:22 final size:22
Alignment explanation
Indices: 2246--2342 Score: 88
Period size: 22 Copynumber: 4.4 Consensus size: 22
2236 TCAGTGAAGT
*
2246 AAATTGAAGA-ATTGAATAATTTG
1 AAATTGAA-ACATTGAAGAA-TTG
* * ***
2269 AAATTGAAGCGTTGACTTATTG
1 AAATTGAAACATTGAAGAATTG
*
2291 AAATTGTAACATTGAAGAATTG
1 AAATTGAAACATTGAAGAATTG
*
2313 AAATTGAAACATTGAAGGATTG
1 AAATTGAAACATTGAAGAATTG
*
2335 AATTTGAA
1 AAATTGAA
2343 GAATAGAAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
22 46 0.77
23 14 0.23
ACGTcount: A:0.43, C:0.04, G:0.20, T:0.33
Consensus pattern (22 bp):
AAATTGAAACATTGAAGAATTG
Found at i:2318 original size:14 final size:14
Alignment explanation
Indices: 2314--2533 Score: 70
Period size: 14 Copynumber: 15.5 Consensus size: 14
2304 GAAGAATTGA
2314 AATTGAAACATTGAAG
1 AATTGAAA--TTGAAG
* *
2330 GATTGAATTTGAAG
1 AATTGAAATTGAAG
*
2344 AATAGAAATTGAAG
1 AATTGAAATTGAAG
* * *
2358 CATTGAAGAAT-AGG
1 AATTGAA-ATTGAAG
*
2372 AATAGAAATATTGAAG
1 AATTG-AA-ATTGAAG
* *
2388 GATTGAATTTGAAG
1 AATTGAAATTGAAG
*
2402 ATTTGAAATAATTGAAG
1 AATTG--A-AATTGAAG
*
2419 CATTGAAACATTGAAG
1 AATTG-AA-ATTGAAG
*
2435 AATTGAACTTGAA-
1 AATTGAAATTGAAG
2448 ACATTGAAATACTG-A-
1 A-ATTGAAAT--TGAAG
2463 AATTGAAGCATTGAA-
1 AATTGAA--ATTGAAG
*
2478 ATATTGAAACTGAAG
1 A-ATTGAAATTGAAG
*
2493 CATT---A---AAG
1 AATTGAAATTGAAG
2501 AATTGAAA--GAAG
1 AATTGAAATTGAAG
2513 AATTGAAATTGAAG
1 AATTGAAATTGAAG
*
2527 CATTGAA
1 AATTGAA
2534 GATTTGGAAT
Statistics
Matches: 154, Mismatches: 29, Indels: 44
0.68 0.13 0.19
Matches are distributed among these distances:
8 6 0.04
11 2 0.01
12 11 0.07
13 1 0.01
14 74 0.48
15 15 0.10
16 35 0.23
17 10 0.06
ACGTcount: A:0.47, C:0.05, G:0.20, T:0.27
Consensus pattern (14 bp):
AATTGAAATTGAAG
Found at i:2327 original size:36 final size:35
Alignment explanation
Indices: 2287--2366 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 35
2277 GCGTTGACTT
*
2287 ATTGAA-ATTGTAACATTGAAGAATTGAAATTGAAAC
1 ATTGAAGATTG-AA-ATTGAAGAATAGAAATTGAAAC
* *
2323 ATTGAAGGATTGAATTTGAAGAATAGAAATTGAAGC
1 ATTGAA-GATTGAAATTGAAGAATAGAAATTGAAAC
2359 ATTGAAGA
1 ATTGAAGA
2367 ATAGGAATAG
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
35 2 0.05
36 31 0.79
37 2 0.05
38 4 0.10
ACGTcount: A:0.46, C:0.04, G:0.21, T:0.29
Consensus pattern (35 bp):
ATTGAAGATTGAAATTGAAGAATAGAAATTGAAAC
Found at i:2362 original size:58 final size:60
Alignment explanation
Indices: 2290--2433 Score: 179
Period size: 58 Copynumber: 2.4 Consensus size: 60
2280 TTGACTTATT
*
2290 GAAATTGTAA-CATTGAAGAATTGAAATTGAAACATTGAAGGATTGAATTTGAAGA-AT-A
1 GAAATTG-AAGCATTGAAGAATTGAAATAGAAACATTGAAGGATTGAATTTGAAGATATGA
* * * *
2348 GAAATTGAAGCATTGAAGAATAGGAATAGAAATATTGAAGGATTGAATTTGAAGATTTGA
1 GAAATTGAAGCATTGAAGAATTGAAATAGAAACATTGAAGGATTGAATTTGAAGATATGA
*
2408 AATAATTGAAGCATTGAA-ACATTGAA
1 GA-AATTGAAGCATTGAAGA-ATTGAA
2434 GAATTGAACT
Statistics
Matches: 73, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
57 2 0.03
58 48 0.66
59 1 0.01
60 3 0.04
61 19 0.26
ACGTcount: A:0.47, C:0.03, G:0.22, T:0.28
Consensus pattern (60 bp):
GAAATTGAAGCATTGAAGAATTGAAATAGAAACATTGAAGGATTGAATTTGAAGATATGA
Found at i:2449 original size:22 final size:22
Alignment explanation
Indices: 2338--2507 Score: 98
Period size: 22 Copynumber: 7.6 Consensus size: 22
2328 AGGATTGAAT
* * *
2338 TTGAAGAATAGAAATTGAAGCA
1 TTGAAGAATTGAACTTGAAACA
* * *
2360 TTGAAGAATAGGAA-TAGAAATA
1 TTGAAGAAT-TGAACTTGAAACA
* * *
2382 TTGAAGGATTGAATTTGAAGA-T
1 TTGAAGAATTGAACTTGAA-ACA
*
2404 TTGAAATAATTGAAGCATTGAAACA
1 TTG-AAGAATTGAA-C-TTGAAACA
2429 TTGAAGAATTGAACTTGAAACA
1 TTGAAGAATTGAACTTGAAACA
* * *
2451 TTGAA-ATACTGAAATTGAAGCA
1 TTGAAGA-ATTGAACTTGAAACA
*
2473 TTGAA-ATATTGAAAC-TGAAGCA
1 TTGAAGA-ATTG-AACTTGAAACA
*
2495 TTAAAGAATTGAA
1 TTGAAGAATTGAA
2508 AGAAGAATTG
Statistics
Matches: 119, Mismatches: 19, Indels: 21
0.75 0.12 0.13
Matches are distributed among these distances:
21 6 0.05
22 79 0.66
23 16 0.13
24 10 0.08
25 8 0.07
ACGTcount: A:0.47, C:0.05, G:0.20, T:0.28
Consensus pattern (22 bp):
TTGAAGAATTGAACTTGAAACA
Found at i:2454 original size:8 final size:8
Alignment explanation
Indices: 2412--2487 Score: 63
Period size: 8 Copynumber: 10.0 Consensus size: 8
2402 ATTTGAAATA
*
2412 ATTGAAGC
1 ATTGAAAC
2420 ATTGAAAC
1 ATTGAAAC
2428 ATTGAAGA-
1 ATTGAA-AC
2436 ATTG-AAC
1 ATTGAAAC
2443 -TTGAAAC
1 ATTGAAAC
*
2450 ATTGAAAT
1 ATTGAAAC
*
2458 ACTG-AA-
1 ATTGAAAC
*
2464 ATTGAAGC
1 ATTGAAAC
*
2472 ATTGAAAT
1 ATTGAAAC
2480 ATTGAAAC
1 ATTGAAAC
2488 TGAAGCATTA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
6 7 0.13
7 7 0.13
8 39 0.72
9 1 0.02
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.28
Consensus pattern (8 bp):
ATTGAAAC
Found at i:2456 original size:30 final size:30
Alignment explanation
Indices: 2412--2487 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 30
2402 ATTTGAAATA
* *
2412 ATTGAAGCATTGAAACATTGAAGAATTGAA-C
1 ATTGAAACATTGAAACACTG-A-AATTGAAGC
*
2443 -TTGAAACATTGAAATACTGAAATTGAAGC
1 ATTGAAACATTGAAACACTGAAATTGAAGC
*
2472 ATTGAAATATTGAAAC
1 ATTGAAACATTGAAAC
2488 TGAAGCATTA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 7 0.18
29 2 0.05
30 29 0.76
ACGTcount: A:0.46, C:0.09, G:0.17, T:0.28
Consensus pattern (30 bp):
ATTGAAACATTGAAACACTGAAATTGAAGC
Found at i:2533 original size:8 final size:8
Alignment explanation
Indices: 2412--2534 Score: 54
Period size: 8 Copynumber: 16.9 Consensus size: 8
2402 ATTTGAAATA
2412 ATTGAAGC
1 ATTGAAGC
*
2420 ATTGAAAC
1 ATTGAAGC
*
2428 ATTGAAGA
1 ATTGAAGC
2436 ATTGAA-C
1 ATTGAAGC
*
2443 -TTGAAAC
1 ATTGAAGC
**
2450 ATTGAAAT
1 ATTGAAGC
*
2458 ACTGAA--
1 ATTGAAGC
2464 ATTGAAGC
1 ATTGAAGC
**
2472 ATTGAAAT
1 ATTGAAGC
2480 ATTGAA--
1 ATTGAAGC
*
2486 ACTGAAGC
1 ATTGAAGC
* *
2494 ATTAAAGA
1 ATTGAAGC
2502 ATTGAA--
1 ATTGAAGC
*
2508 A--GAAGA
1 ATTGAAGC
2514 ATTGAA--
1 ATTGAAGC
2520 ATTGAAGC
1 ATTGAAGC
2528 ATTGAAG
1 ATTGAAG
2535 ATTTGGAATT
Statistics
Matches: 89, Mismatches: 14, Indels: 24
0.70 0.11 0.19
Matches are distributed among these distances:
4 3 0.03
6 23 0.26
7 1 0.01
8 62 0.70
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.26
Consensus pattern (8 bp):
ATTGAAGC
Found at i:2544 original size:22 final size:22
Alignment explanation
Indices: 2509--2562 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
2499 AGAATTGAAA
2509 GAAGAATTGAAATTGAAGCATT
1 GAAGAATTGAAATTGAAGCATT
* * *
2531 GAAGATTTGGAATTGATGCATT
1 GAAGAATTGAAATTGAAGCATT
*
2553 GAATAATTGA
1 GAAGAATTGA
2563 GGAACGAAAG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.04, G:0.24, T:0.31
Consensus pattern (22 bp):
GAAGAATTGAAATTGAAGCATT
Found at i:2650 original size:58 final size:59
Alignment explanation
Indices: 2541--2682 Score: 173
Period size: 58 Copynumber: 2.4 Consensus size: 59
2531 GAAGATTTGG
* * *
2541 AATTGATGCATTGAATAATTG-AGGAACGAAAGAAAGACCACCACGTATCATTGAAGCA
1 AATTGAAGCATTGAATAATTGAAGAAACGAAAGAAAGACCACCACGGATCATTGAAGCA
* * **
2599 AATTGAAGTATTGAATAATTGAAGAAACG-AAGAAAGACCACC-CTGGGTCATTGAAGTG
1 AATTGAAGCATTGAATAATTGAAGAAACGAAAGAAAGACCACCAC-GGATCATTGAAGCA
* *
2657 AGTTGAAGCATTGAGTAATTGAAGAA
1 AATTGAAGCATTGAATAATTGAAGAA
2683 TTGAAGCAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
57 1 0.01
58 65 0.90
59 6 0.08
ACGTcount: A:0.42, C:0.12, G:0.23, T:0.23
Consensus pattern (59 bp):
AATTGAAGCATTGAATAATTGAAGAAACGAAAGAAAGACCACCACGGATCATTGAAGCA
Found at i:2684 original size:8 final size:8
Alignment explanation
Indices: 2659--2750 Score: 68
Period size: 8 Copynumber: 11.9 Consensus size: 8
2649 TTGAAGTGAG
*
2659 TTGAAGCA
1 TTGAAGAA
2667 TTG-AGTAA
1 TTGAAG-AA
2675 TTGAAGAA
1 TTGAAGAA
2683 TTGAAGCAA
1 TTGAAG-AA
* *
2692 -TAAATAA
1 TTGAAGAA
2699 TTGAAGAA
1 TTGAAGAA
2707 TTGAAGAA
1 TTGAAGAA
*
2715 AT--A-AA
1 TTGAAGAA
*
2720 TTGAAGTA
1 TTGAAGAA
2728 TTGAAGAA
1 TTGAAGAA
*
2736 TTGAATAA
1 TTGAAGAA
*
2744 TTAAAGA
1 TTGAAGA
2751 GCCGAAGAGA
Statistics
Matches: 65, Mismatches: 12, Indels: 14
0.71 0.13 0.15
Matches are distributed among these distances:
5 3 0.05
6 1 0.02
7 5 0.08
8 52 0.80
9 4 0.06
ACGTcount: A:0.50, C:0.02, G:0.20, T:0.28
Consensus pattern (8 bp):
TTGAAGAA
Found at i:2689 original size:24 final size:24
Alignment explanation
Indices: 2672--2750 Score: 92
Period size: 24 Copynumber: 3.4 Consensus size: 24
2662 AAGCATTGAG
* *
2672 TAATTGAAGAATTGAAGCAATAAA
1 TAATTGAAGAATTGAAGAAATGAA
2696 TAATTGAAGAATTGAAGAAAT--A
1 TAATTGAAGAATTGAAGAAATGAA
* *
2718 -AATTGAAGTATTGAAGAATTGAA
1 TAATTGAAGAATTGAAGAAATGAA
*
2741 TAATTAAAGA
1 TAATTGAAGA
2751 GCCGAAGAGA
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
21 18 0.38
22 1 0.02
23 1 0.02
24 27 0.57
ACGTcount: A:0.53, C:0.01, G:0.18, T:0.28
Consensus pattern (24 bp):
TAATTGAAGAATTGAAGAAATGAA
Found at i:2731 original size:45 final size:45
Alignment explanation
Indices: 2673--2785 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 45
2663 AGCATTGAGT
* * **
2673 AATTGAAGAATTGAAGCAA-TAAATAATTGAAGAATTGAAGAAATA
1 AATTGAAGTATTGAAG-AATTAAATAATTAAAGAACCGAAGAAATA
* * *
2718 AATTGAAGTATTGAAGAATTGAATAATTAAAGAGCCGAAGAGATA
1 AATTGAAGTATTGAAGAATTAAATAATTAAAGAACCGAAGAAATA
* *
2763 AATTGAAGTGTTGAATAATTAAA
1 AATTGAAGTATTGAAGAATTAAA
2786 GAGTCGAAGA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 2 0.04
45 55 0.96
ACGTcount: A:0.51, C:0.03, G:0.19, T:0.27
Consensus pattern (45 bp):
AATTGAAGTATTGAAGAATTAAATAATTAAAGAACCGAAGAAATA
Found at i:2738 original size:37 final size:37
Alignment explanation
Indices: 2697--2832 Score: 119
Period size: 37 Copynumber: 3.5 Consensus size: 37
2687 AGCAATAAAT
*
2697 AATTGAAGAATTGAAGAAATAAATTGAAGTATTGAAG
1 AATTGAAGAATTGAAGAGATAAATTGAAGTATTGAAG
* * *
2734 AATTGAATAATTAAAGAGCCGAAGAGATAAATTGAAGTGTTGAAT
1 AATTGAAGAATT--------GAAGAGATAAATTGAAGTATTGAAG
* * *
2779 AATTAAAGAGTCGAAGAGATAAATTGAAGTATTGAAG
1 AATTGAAGAATTGAAGAGATAAATTGAAGTATTGAAG
* *
2816 AATTGAATAATGGAAGA
1 AATTGAAGAATTGAAGA
2833 TTTGTAGCAT
Statistics
Matches: 77, Mismatches: 14, Indels: 16
0.72 0.13 0.15
Matches are distributed among these distances:
37 47 0.61
45 30 0.39
ACGTcount: A:0.49, C:0.02, G:0.23, T:0.26
Consensus pattern (37 bp):
AATTGAAGAATTGAAGAGATAAATTGAAGTATTGAAG
Found at i:2739 original size:16 final size:16
Alignment explanation
Indices: 2648--2740 Score: 53
Period size: 16 Copynumber: 5.4 Consensus size: 16
2638 ACCCTGGGTC
*
2648 ATTGAAGTGAGTTGAAGC
1 ATTGAAGT-A-TTGAAGA
2666 ATTG-AGTAATTGAAGA
1 ATTGAAGT-ATTGAAGA
* * * *
2682 ATTGAAGCAATAAATA
1 ATTGAAGTATTGAAGA
*
2698 ATTGAAGAATTGAAGAAATAA
1 ATTGAAGTATTGAAG-----A
2719 ATTGAAGTATTGAAGA
1 ATTGAAGTATTGAAGA
2735 ATTGAA
1 ATTGAA
2741 TAATTAAAGA
Statistics
Matches: 58, Mismatches: 11, Indels: 14
0.70 0.13 0.17
Matches are distributed among these distances:
16 33 0.57
17 6 0.10
18 4 0.07
21 15 0.26
ACGTcount: A:0.47, C:0.02, G:0.23, T:0.28
Consensus pattern (16 bp):
ATTGAAGTATTGAAGA
Found at i:2796 original size:45 final size:45
Alignment explanation
Indices: 2709--2796 Score: 104
Period size: 45 Copynumber: 2.0 Consensus size: 45
2699 TTGAAGAATT
* * *
2709 GAAGAAATAAATTGAAGTATTGAAGAATTGAATAATTAAAGAGCC
1 GAAGAAATAAATTGAAGTATTGAAGAATTAAAGAATCAAAGAGCC
* * * * *
2754 GAAGAGATAAATTGAAGTGTTGAATAATTAAAGAGTCGAAGAG
1 GAAGAAATAAATTGAAGTATTGAAGAATTAAAGAATCAAAGAG
2797 ATAAATTGAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.24, T:0.24
Consensus pattern (45 bp):
GAAGAAATAAATTGAAGTATTGAAGAATTAAAGAATCAAAGAGCC
Done.