Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006057.1 Corchorus capsularis cultivar CVL-1 contig06075, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 18505
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35


Found at i:8837 original size:14 final size:14

Alignment explanation


    Indices: 8818--8847  Score: 60
    Period size: 14  Copynumber: 2.1  Consensus size: 14

       8808 TTGAGACCTC

                          
       8818 GTGTATCTGAGTTT
          1 GTGTATCTGAGTTT

                          
       8832 GTGTATCTGAGTTT
          1 GTGTATCTGAGTTT

              
       8846 GT
          1 GT

       8848 TGGATGAGTC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.13, C:0.07, G:0.30, T:0.50


Consensus pattern (14 bp):   
GTGTATCTGAGTTT
Done.