Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006058.1 Corchorus capsularis cultivar CVL-1 contig06076, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61757

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--49
2
24.0
2
100
0
96
50
0
0
50
1.00
1945--1993
3
17.0
3
87
8
75
63
0
36
0
0.95
31748--31791
3
14.7
3
95
0
79
63
0
2
34
1.07
44573--44686
32
3.6
32
79
11
153
50
3
11
35
1.56
44565--44691
63
2.0
63
100
0
254
49
3
11
36
1.54
45727--45961
134
1.8
128
89
7
375
48
1
11
37
1.50
47601--47644
23
1.9
23
81
9
54
54
0
15
29
1.42
48094--49407
331
4.0
325
79
6
1296
33
14
15
36
1.87
49563--49605
11
3.9
11
90
0
59
46
4
4
44
1.45
49559--49605
22
2.1
22
92
0
76
46
4
4
44
1.42
52207--53417
349
3.5
343
84
7
1407
33
14
14
38
1.86
54997--55072
31
2.5
30
77
6
73
39
10
18
31
1.85
55122--56515
335
4.2
331
89
2
2071
33
13
14
38
1.86
55117--56515
667
2.1
662
91
1
2273
33
14
14
38
1.86
57173--57208
18
2.0
18
88
0
54
44
0
33
22
1.53
61210--61406
101
2.0
100
89
1
304
24
24
25
25
2.00

Tables:   1

The End!