Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006059.1 Corchorus capsularis cultivar CVL-1 contig06077, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5230
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30


Found at i:4455 original size:23 final size:23

Alignment explanation


    Indices: 4407--4456  Score: 57
    Period size: 23  Copynumber: 2.2  Consensus size: 23

       4397 AATGAAACGG

                      *          * 
       4407 TAAAACAAATCAAACACAAAAGA
          1 TAAAACAAATAAAACACAAAAAA

                 *                  
       4430 TAAAATAAATAAAACA-AGAAAAA
          1 TAAAACAAATAAAACACA-AAAAA

                
       4453 TAAA
          1 TAAA

       4457 GACTAATCCT


Statistics
Matches: 23,  Mismatches: 3, Indels: 2
        0.82            0.11        0.07

Matches are distributed among these distances:
  22    1  0.04
  23   22  0.96

ACGTcount: A:0.74, C:0.10, G:0.04, T:0.12


Consensus pattern (23 bp):   
TAAAACAAATAAAACACAAAAAA
Done.