Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006061.1 Corchorus capsularis cultivar CVL-1 contig06079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42139

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9313--9374
27
2.3
26
81
15
65
46
1
4
46
1.33
9424--9450
2
13.5
2
100
0
54
48
0
0
51
1.00
9485--9696
110
1.9
110
93
1
363
28
26
17
27
1.98
24832--24877
23
2.0
23
86
0
65
17
10
26
45
1.81
25405--25501
48
2.0
48
100
0
194
32
14
8
44
1.75
30561--30592
12
2.7
12
95
0
55
18
15
56
9
1.66
34246--34356
31
3.6
30
77
12
100
26
2
16
54
1.55
37104--37142
11
3.4
11
92
7
60
46
15
0
38
1.46
37104--37142
13
3.2
13
85
14
64
46
15
0
38
1.46
37455--37494
3
13.3
3
100
0
80
32
0
0
67
0.91
38133--38558
165
2.5
168
81
5
481
30
16
15
38
1.89
38630--39203
287
2.0
285
93
0
977
32
17
16
33
1.93
39147--39233
45
1.9
45
95
0
156
34
20
20
24
1.97

Tables:   1

The End!