Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006067.1 Corchorus capsularis cultivar CVL-1 contig06085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12394

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
867--964
35
2.8
35
88
0
160
24
23
16
35
1.95
2414--2579
69
2.4
69
97
0
314
28
20
18
32
1.96
2411--2581
33
5.0
33
90
7
254
27
20
18
33
1.96
2691--2780
43
2.1
43
100
0
180
33
14
11
41
1.81
5807--5924
59
2.1
55
85
6
155
32
12
8
46
1.72
6046--6120
29
2.5
31
86
4
109
30
16
28
25
1.96
7930--7998
34
2.0
34
100
0
138
33
11
23
31
1.90
7935--8008
34
2.2
34
90
4
114
36
12
20
31
1.89
10067--10137
15
4.6
15
78
5
79
7
11
36
45
1.67
10067--10137
31
2.3
31
92
0
115
7
11
36
45
1.67
10696--10733
19
2.0
19
100
0
76
47
26
10
15
1.78
10939--10998
16
3.8
16
82
8
77
5
16
40
38
1.71
10955--11027
16
4.6
16
81
6
94
8
15
36
39
1.77
10942--11014
32
2.3
32
92
0
119
6
15
38
39
1.74
10953--11027
32
2.3
32
86
0
105
8
16
36
40
1.77
11805--11837
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!