Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006069.1 Corchorus capsularis cultivar CVL-1 contig06087, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54794

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
407--588
22
8.2
21
75
9
141
33
9
19
37
1.85
624--745
22
5.6
21
72
11
86
34
9
19
36
1.83
882--1029
22
6.7
22
71
7
95
46
10
10
31
1.73
1130--1686
22
25.5
22
69
14
197
39
10
14
36
1.80
1130--1686
44
12.8
43
67
15
218
39
10
14
36
1.80
1299--1379
23
3.5
23
81
5
92
40
6
13
39
1.70
1586--1632
20
2.2
22
85
7
62
53
4
14
27
1.60
2641--2717
39
2.0
39
94
0
136
29
16
24
28
1.97
4995--5027
2
17.0
2
93
6
59
51
0
0
48
1.00
10183--10235
26
2.0
26
100
0
106
50
7
0
41
1.30
11025--11610
319
1.8
319
95
0
1064
27
26
11
34
1.91
27084--27108
7
3.6
7
100
0
50
24
0
0
76
0.80
30384--30424
20
2.0
20
90
0
64
70
0
9
19
1.14
39657--39806
75
2.0
75
100
0
300
26
33
4
36
1.75
43058--43119
22
2.8
22
80
4
63
45
8
8
38
1.63
43264--43352
22
4.0
22
70
25
71
40
10
15
33
1.81
43212--43341
48
2.8
47
82
12
137
43
10
13
32
1.78
47603--47674
29
2.4
29
81
2
81
37
26
13
22
1.92
48329--48484
74
2.2
71
82
8
181
51
5
12
31
1.61

Tables:   1

The End!