Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006070.1 Corchorus capsularis cultivar CVL-1 contig06088, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13175
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28


Found at i:5386 original size:2 final size:2

Alignment explanation


    Indices: 5381--5425  Score: 90
    Period size: 2  Copynumber: 22.5  Consensus size: 2

       5371 AAAAAAAAAA

                                                                          
       5381 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

                
       5423 AC A
          1 AC A

       5426 TTTCAATGTT


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Found at i:5910 original size:2 final size:2

Alignment explanation


    Indices: 5903--5953  Score: 102
    Period size: 2  Copynumber: 25.5  Consensus size: 2

       5893 GGAATTCTTA

                                                                          
       5903 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

                         
       5945 AC AC AC AC A
          1 AC AC AC AC A

       5954 AAAGCAAGAT


Statistics
Matches: 49,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   49  1.00

ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Done.