Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006072.1 Corchorus capsularis cultivar CVL-1 contig06090, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67792

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110--170
16
3.8
16
77
0
77
47
34
13
4
1.64
326--396
32
2.2
32
92
0
115
39
35
11
14
1.81
459--491
2
16.5
2
100
0
66
48
0
0
51
1.00
544--571
2
14.0
2
100
0
56
50
0
0
50
1.00
1028--1100
29
2.4
30
84
4
94
21
13
27
36
1.92
1946--1970
2
12.5
2
100
0
50
48
0
0
52
1.00
9452--9495
22
2.0
22
100
0
88
31
9
13
45
1.75
24929--25010
42
2.0
42
82
0
101
20
17
14
47
1.82
25267--25533
115
2.3
115
97
0
498
40
22
9
26
1.85
25943--25984
19
2.2
19
95
0
75
23
2
16
57
1.51
31388--31689
148
2.0
149
92
1
500
25
27
15
31
1.96
41610--41636
12
2.2
12
100
0
54
66
7
18
7
1.40
41700--41755
27
2.1
27
100
0
112
26
21
7
44
1.78
46383--46472
3
29.7
3
76
2
63
3
42
0
54
1.17
57408--57441
14
2.5
13
86
9
50
52
2
8
35
1.47
57609--57643
2
17.5
2
93
0
61
45
0
2
51
1.16
58825--59088
107
2.5
105
82
9
345
38
9
8
43
1.66
60033--60070
16
2.4
16
87
12
53
7
15
39
36
1.77
60123--60154
16
2.0
16
93
0
55
0
15
37
46
1.46
61351--61402
15
3.4
15
77
15
52
5
11
42
40
1.65
61360--61402
16
2.8
15
89
3
59
4
11
41
41
1.62
63202--63260
27
2.1
28
84
6
75
32
1
5
61
1.28

Tables:   1

The End!