Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006073.1 Corchorus capsularis cultivar CVL-1 contig06091, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5140
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33


Found at i:3248 original size:70 final size:70

Alignment explanation


    Indices: 3135--3270  Score: 263
    Period size: 70  Copynumber: 1.9  Consensus size: 70

       3125 AGAGGAAGGT

                                                                             
       3135 CTAAAACCAATTGGGTGAGAGTAATAGTGATGGTGAAGAAAATGCAAAATTTTTAAGATAAATGA
          1 CTAAAACCAATTGGGTGAGAGTAATAGTGATGGTGAAGAAAATGCAAAATTTTTAAGATAAATGA

                 
       3200 ATGGA
         66 ATGGA

                     *                                                       
       3205 CTAAAACCAGTTGGGTGAGAGTAATAGTGATGGTGAAGAAAATGCAAAATTTTTAAGATAAATGA
          1 CTAAAACCAATTGGGTGAGAGTAATAGTGATGGTGAAGAAAATGCAAAATTTTTAAGATAAATGA

             
       3270 A
         66 A

       3271 AGGAGATAAA


Statistics
Matches: 65,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  70   65  1.00

ACGTcount: A:0.44, C:0.06, G:0.24, T:0.26


Consensus pattern (70 bp):   
CTAAAACCAATTGGGTGAGAGTAATAGTGATGGTGAAGAAAATGCAAAATTTTTAAGATAAATGA
ATGGA
Done.