Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006074.1 Corchorus capsularis cultivar CVL-1 contig06092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29244

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3448--3533
42
2.0
42
88
0
127
8
25
46
19
1.77
3506--3548
12
3.6
12
83
0
50
9
30
37
23
1.86
4627--4716
33
2.7
32
79
6
99
22
11
23
43
1.85
5409--5539
47
2.8
47
81
6
133
19
23
21
35
1.96
5552--5917
40
9.1
40
72
13
272
15
23
21
40
1.91
5560--5944
80
4.8
79
81
8
363
16
23
21
38
1.92
5698--5889
42
4.9
38
76
14
139
15
25
20
39
1.91
5698--5910
117
1.8
117
81
11
267
15
23
20
39
1.91
5913--6092
50
3.7
49
84
5
159
17
31
18
32
1.94
5962--6092
50
2.6
50
89
4
194
15
29
19
35
1.92
12435--12624
95
2.0
96
90
3
303
55
3
21
19
1.58
12434--12643
32
6.6
32
88
1
305
55
3
22
18
1.57
12435--12666
127
1.8
127
84
0
320
55
3
22
18
1.59
12665--12868
40
5.1
39
75
11
171
50
4
20
24
1.67
12665--12868
80
2.5
81
84
2
241
50
4
20
24
1.67
12932--13034
40
2.6
40
78
9
95
50
3
23
22
1.65
13079--13334
29
8.4
29
71
19
173
53
3
23
19
1.59
13058--13362
36
8.5
36
79
11
322
53
2
23
20
1.58
13288--13374
29
3.0
28
76
14
79
56
2
20
20
1.53
13353--13575
27
8.0
27
79
10
216
56
3
21
18
1.55
13352--13575
57
4.0
55
78
13
217
56
3
22
18
1.55
13352--13569
113
1.9
113
85
5
298
56
3
21
18
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14370--14500
47
2.8
48
82
5
153
19
22
20
36
1.95
14513--14843
40
8.1
40
77
10
307
15
24
22
37
1.93
14888--15019
50
2.6
49
86
4
183
15
29
19
34
1.93
27527--27606
33
2.4
33
89
0
124
21
38
28
11
1.88

Tables:   1

The End!