Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006077.1 Corchorus capsularis cultivar CVL-1 contig06095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56630

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
320--373
3
18.0
3
96
0
99
64
0
33
1
1.04
7754--7821
27
2.5
27
92
0
109
29
16
23
30
1.96
12704--12771
27
2.5
27
85
4
93
32
25
14
27
1.95
13818--14003
92
2.0
92
98
0
363
46
9
27
16
1.78
15113--15163
25
2.0
25
92
0
84
29
19
11
39
1.87
20670--20714
22
2.0
22
87
8
65
37
2
2
57
1.23
20876--20900
6
4.2
6
100
0
50
0
32
36
32
1.58
27347--27601
139
1.8
139
83
1
339
36
17
14
31
1.90
28141--28173
16
2.1
16
100
0
66
12
33
18
36
1.88
32438--32571
67
2.0
67
94
0
232
45
14
8
31
1.75
35384--35417
2
17.0
2
93
0
59
47
0
2
50
1.16
37960--38077
60
2.0
60
87
0
173
29
14
27
27
1.95
42215--42642
165
2.6
161
84
5
518
40
14
15
29
1.86
47589--47632
23
2.0
23
86
4
63
18
18
29
34
1.94
48589--48646
29
2.0
29
93
0
98
39
8
22
29
1.84
49021--49098
14
5.6
14
70
17
56
41
1
2
55
1.22
49021--49069
3
15.7
3
80
16
55
36
0
4
59
1.17
49157--49193
2
18.5
2
94
0
65
48
2
0
48
1.15
56106--56151
23
2.0
23
91
8
76
30
28
2
39
1.69

Tables:   1

The End!