Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006079.1 Corchorus capsularis cultivar CVL-1 contig06097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25301

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
160--185
1
26.0
1
100
0
52
0
0
0
100
0.00
7288--7411
30
4.1
30
87
0
167
12
28
15
44
1.82
7853--7935
35
2.4
35
85
0
121
50
20
10
18
1.76
8036--8130
40
2.3
40
85
5
120
50
21
3
25
1.63
8059--8139
40
2.0
40
100
0
162
50
22
4
22
1.68
10044--10150
53
2.0
53
94
0
187
40
7
12
40
1.71
13042--13072
15
2.1
15
93
0
53
41
3
6
48
1.45
13814--13859
15
3.0
15
87
9
58
10
0
76
13
1.03
16819--16854
13
2.7
13
86
4
54
30
8
0
61
1.26
18774--18855
40
2.0
40
88
6
121
29
24
13
32
1.93
19762--19808
3
15.7
3
95
0
85
68
2
0
29
1.02
20741--20765
3
8.3
3
100
0
50
68
0
0
32
0.90

Tables:   1

The End!