Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006084.1 Corchorus capsularis cultivar CVL-1 contig06102, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34311

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1031--1430
132
3.0
131
86
6
531
39
10
2
47
1.51
1416--1462
24
1.9
24
87
12
69
40
8
2
48
1.45
2460--2499
3
13.3
3
100
0
80
67
0
0
32
0.91
3046--3079
15
2.4
14
90
5
50
38
17
0
44
1.49
3225--4052
412
2.0
415
94
0
1455
27
15
14
41
1.87
5087--5147
30
2.0
30
90
6
97
27
16
34
21
1.95
5189--5226
18
2.1
19
90
5
60
28
13
39
18
1.88
7728--7875
38
3.9
38
87
2
208
25
35
18
20
1.95
8053--8087
16
2.2
17
90
10
56
54
5
2
37
1.39
10472--10505
15
2.2
16
94
5
61
38
2
5
52
1.41
11143--11712
48
11.9
48
88
1
804
40
23
23
12
1.88
21576--21729
38
4.1
38
92
2
247
22
16
35
25
1.95
21758--21789
6
5.3
6
100
0
64
15
0
34
50
1.45
22781--22808
14
2.0
14
100
0
56
78
7
0
14
0.95
24862--24932
1
71.0
1
77
0
70
0
0
11
88
0.51
24862--24932
11
6.3
11
84
15
92
0
0
11
88
0.51

Tables:   1

The End!