Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006087.1 Corchorus capsularis cultivar CVL-1 contig06105, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18744

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5275--5312
18
2.2
17
86
9
51
60
21
5
13
1.52
9227--9266
19
2.0
20
90
4
64
70
0
5
25
1.08
9978--10251
62
4.3
62
82
6
311
38
14
19
27
1.90
9958--10315
62
5.6
66
76
13
225
38
14
18
27
1.90
11935--12004
21
3.5
21
76
11
92
22
7
17
52
1.68
11929--12040
39
2.9
39
90
0
161
23
5
18
52
1.66
11940--12000
18
3.2
18
65
13
50
22
6
19
50
1.70
11950--12019
18
3.7
18
74
12
59
18
7
20
54
1.67
15079--15146
27
2.5
26
83
9
75
19
17
25
38
1.93
16845--16879
17
2.1
17
89
5
54
48
5
34
11
1.63
18606--18679
22
3.4
23
83
9
86
52
5
20
21
1.66

Tables:   1

The End!