Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006098.1 Corchorus capsularis cultivar CVL-1 contig06116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16811

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
887--1432
156
3.5
155
78
8
500
31
14
19
34
1.92
1745--1827
17
4.9
17
95
0
139
20
33
15
30
1.94
1773--1821
10
5.5
10
73
26
56
22
36
10
30
1.87
3320--3344
4
6.2
4
100
0
50
76
0
0
24
0.80
15048--15132
11
7.1
11
69
26
50
16
23
0
60
1.36
15042--15132
36
2.5
37
91
8
150
17
23
0
59
1.38
15211--15286
21
3.6
21
77
7
91
21
21
7
50
1.74
15332--15388
15
3.9
15
68
13
55
15
24
5
54
1.62
15293--15485
65
2.8
72
79
10
188
16
20
7
55
1.64
15366--15502
21
6.4
21
77
10
134
16
19
6
57
1.60
15366--15523
21
7.4
22
74
16
127
15
18
6
60
1.56
15366--15519
43
3.6
41
77
13
143
14
18
6
60
1.55
15369--15523
65
2.4
63
81
8
170
15
18
6
59
1.57
15489--15542
27
2.0
28
82
10
67
16
12
3
66
1.38
15819--15862
22
1.9
24
90
9
74
31
20
4
43
1.72
15945--16060
56
2.1
56
88
3
173
26
18
6
48
1.73

Tables:   1

The End!