Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006103.1 Corchorus capsularis cultivar CVL-1 contig06121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31052

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1680--1731
8
6.0
8
75
16
50
80
9
3
5
0.99
3517--4100
49
11.9
49
91
1
897
23
34
13
28
1.93
5454--5558
26
4.0
26
83
4
131
56
8
19
16
1.65
5590--5651
22
2.9
21
79
11
54
53
8
19
19
1.69
5640--5694
15
3.8
14
82
2
65
61
1
14
21
1.42
5640--5700
7
8.4
7
75
7
50
60
1
16
21
1.44
5640--5745
15
7.4
14
72
5
52
59
1
17
20
1.47
5678--5940
34
7.5
34
72
19
202
57
1
21
19
1.51
5683--5902
110
2.0
108
83
13
272
56
1
21
19
1.51
5786--5860
7
11.0
7
69
11
57
56
2
24
17
1.54
5839--5981
28
4.9
28
70
12
81
56
2
23
17
1.54
5990--6035
21
2.1
22
92
4
76
56
8
19
15
1.65
7943--8036
30
3.2
30
76
1
91
40
24
8
26
1.84
8657--8730
31
2.4
31
86
4
105
32
6
29
31
1.83
10781--10815
3
11.7
3
88
11
54
0
28
2
68
1.04
18013--18084
30
2.4
31
88
2
101
36
18
18
27
1.94
19248--19330
42
2.0
43
85
7
116
21
19
24
34
1.96
19318--19360
20
2.1
21
86
4
61
39
20
18
20
1.93
19501--19528
14
2.0
14
100
0
56
50
0
0
50
1.00
20866--20907
16
2.5
17
92
7
77
21
26
26
26
1.99
21806--21881
25
3.1
25
86
1
100
48
10
15
25
1.77
27932--28326
98
4.0
98
90
1
630
34
10
14
41
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28382--28410
13
2.1
14
93
6
51
31
13
3
51
1.58
30924--30963
2
20.0
2
100
0
80
50
0
0
50
1.00

Tables:   1

The End!