Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006104.1 Corchorus capsularis cultivar CVL-1 contig06122, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26960

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96--129
2
17.0
2
93
0
59
50
0
2
47
1.16
583--635
27
2.0
27
92
7
90
13
24
3
58
1.51
5764--5792
13
2.1
14
93
6
51
41
10
27
20
1.85
8867--8916
16
3.1
16
88
0
82
48
8
8
36
1.62
11727--11790
30
2.1
30
85
0
83
26
18
6
48
1.72
11821--12279
22
21.5
22
75
9
346
23
22
4
50
1.67
12111--12169
27
2.2
27
82
11
68
20
22
5
52
1.65
12001--12264
82
3.2
84
78
11
217
21
22
4
50
1.67
11980--12201
21
10.6
21
75
15
83
21
21
4
52
1.66
11818--12351
22
25.5
21
72
12
257
23
21
4
50
1.66
16759--16788
6
5.2
6
96
4
53
0
13
0
86
0.57
21559--21687
26
4.9
26
76
12
104
21
20
4
53
1.63
21560--21684
52
2.3
53
80
9
128
21
20
4
52
1.65
21580--21690
54
2.1
53
84
5
143
20
21
4
53
1.63
21657--21717
17
3.5
17
70
16
61
22
21
3
52
1.61
21657--21726
36
1.9
36
100
0
140
21
21
2
54
1.58
21593--21783
90
2.1
89
81
12
230
19
21
3
54
1.59
21629--21753
63
2.0
64
83
10
159
20
23
4
52
1.63
21684--21779
27
3.6
26
78
14
90
20
21
2
55
1.54
22088--22307
72
3.1
71
83
7
268
27
18
6
47
1.72
22252--22406
55
2.8
55
92
0
247
25
18
6
49
1.71

Tables:   1

The End!