Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006105.1 Corchorus capsularis cultivar CVL-1 contig06123, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43160

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
868--901
3
11.3
3
93
0
59
2
0
64
32
1.08
6531--6642
31
3.6
31
87
1
161
25
19
31
24
1.98
10191--10231
2
20.5
2
81
18
50
46
2
2
48
1.28
10191--10225
17
1.9
19
88
11
56
45
2
0
51
1.16
12276--12346
37
1.9
37
94
0
124
38
8
16
36
1.80
14201--14681
252
1.9
252
99
0
944
37
12
22
27
1.90
15030--15100
37
1.9
37
91
0
115
39
8
15
36
1.78
16350--16423
31
2.4
31
81
0
85
29
21
16
32
1.95
18060--18093
2
17.0
2
88
11
52
47
2
0
50
1.16
18144--18205
27
2.3
28
83
13
85
50
3
0
46
1.17
18983--19048
27
2.4
28
80
7
82
42
7
3
46
1.47
19173--19222
25
2.0
26
96
4
93
38
4
4
54
1.38
25332--25398
34
2.0
34
81
0
80
40
10
7
41
1.67
25961--26014
26
2.1
26
92
0
90
48
3
9
38
1.53
26138--26203
27
2.4
27
85
7
80
48
4
3
43
1.38
27245--27498
130
2.0
130
96
0
472
29
24
6
38
1.81
36739--36763
2
12.5
2
100
0
50
48
0
0
52
1.00

Tables:   1

The End!