Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006110.1 Corchorus capsularis cultivar CVL-1 contig06128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5851
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30


Found at i:5820 original size:16 final size:15

Alignment explanation


    Indices: 5787--5825  Score: 51
    Period size: 16  Copynumber: 2.5  Consensus size: 15

       5777 CCAACAAAAG

                *          
       5787 AAAATAAAAAAAGAA
          1 AAAAGAAAAAAAGAA

                          * 
       5802 AAAAGAAAATAAAGTA
          1 AAAAGAAAA-AAAGAA

                    
       5818 AAAAGAAA
          1 AAAAGAAA

       5826 CAAACAAATC


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15    8  0.38
  16   13  0.62

ACGTcount: A:0.82, C:0.00, G:0.10, T:0.08


Consensus pattern (15 bp):   
AAAAGAAAAAAAGAA
Done.