Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006111.1 Corchorus capsularis cultivar CVL-1 contig06129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49391

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7034--7479
165
2.7
165
83
4
515
39
16
14
30
1.88
7526--7558
15
2.2
15
100
0
66
36
24
0
39
1.56
13379--13491
37
2.9
39
62
19
92
31
13
7
46
1.72
16688--16719
3
10.3
3
93
6
55
65
0
0
34
0.93
17321--17377
15
3.6
16
81
11
64
52
35
7
5
1.51
20552--20591
20
2.0
21
90
5
64
27
7
10
55
1.60
24845--24875
7
4.4
7
100
0
62
25
0
0
74
0.82
25220--25780
22
25.7
22
69
12
198
35
14
10
39
1.80
25351--25436
45
1.9
45
83
4
111
38
16
11
33
1.85
25334--25785
44
10.3
43
70
12
221
36
14
9
38
1.80
25532--25611
23
3.5
23
81
8
92
38
12
7
41
1.71
25486--25611
45
2.8
45
80
10
134
38
12
9
39
1.76
25573--25691
38
2.9
39
79
8
105
32
14
8
44
1.75
25768--25814
19
2.4
20
82
7
60
25
17
8
48
1.74
25928--26071
44
3.3
44
79
0
128
35
14
9
40
1.79
25945--26073
66
2.0
66
82
3
161
34
14
10
41
1.80
25926--26112
22
8.5
22
75
9
107
33
13
10
42
1.78
26150--26200
22
2.3
22
82
0
66
41
19
7
31
1.80
26300--26464
22
7.3
22
75
11
84
37
17
10
33
1.85
26354--26419
25
2.8
23
88
6
89
34
16
15
33
1.90
26630--26666
19
1.9
19
89
10
58
64
0
5
29
1.15
26980--27039
31
1.9
31
86
6
86
50
3
16
30
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30643--30678
7
5.1
7
89
0
54
55
30
0
13
1.39
30919--30975
22
2.6
21
76
17
62
33
5
7
54
1.50
39706--39745
18
2.2
18
86
4
53
45
5
20
30
1.72
40344--40382
11
3.5
11
83
16
53
10
17
2
69
1.28
42508--42730
87
2.6
88
77
5
229
32
8
23
35
1.85
43775--43834
31
1.9
31
83
6
77
51
8
21
18
1.72
43775--43847
29
2.4
30
80
8
69
47
8
26
17
1.75

Tables:   1

The End!