Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006112.1 Corchorus capsularis cultivar CVL-1 contig06130, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5928
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34


Found at i:5072 original size:3 final size:3

Alignment explanation


    Indices: 5064--5100  Score: 56
    Period size: 3  Copynumber: 12.0  Consensus size: 3

       5054 CTCGCAACAA

                                                 *          
       5064 AAT AAT AAT AAT AAT AAT AAT AAT AAAT GAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT

       5101 GAGCAAATCA


Statistics
Matches: 31,  Mismatches: 2, Indels: 2
        0.89            0.06        0.06

Matches are distributed among these distances:
   3   28  0.90
   4    3  0.10

ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32


Consensus pattern (3 bp):   
AAT

Done.