Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006115.1 Corchorus capsularis cultivar CVL-1 contig06133, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88737

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13998--14051
27
2.0
27
92
0
90
33
27
7
31
1.84
15161--15207
21
2.3
20
78
7
51
65
8
8
17
1.44
16032--16069
20
1.9
20
100
0
76
60
15
13
10
1.59
20023--20064
20
2.0
21
90
4
68
23
9
4
61
1.45
23065--23095
15
2.1
15
93
0
53
35
19
16
29
1.93
26651--26692
20
2.0
21
90
4
68
23
9
4
61
1.45
33674--33698
2
12.5
2
100
0
50
52
0
0
48
1.00
33704--33728
11
2.3
11
100
0
50
92
0
8
0
0.40
33698--33735
19
2.0
19
94
0
67
86
0
13
0
0.56
40956--41010
25
2.2
24
93
3
92
32
0
7
60
1.24
46547--46577
2
16.0
2
93
6
55
51
0
0
48
1.00
54069--54130
16
3.7
16
74
17
63
40
6
17
35
1.76
54074--54114
20
2.0
20
90
9
66
41
7
14
36
1.74
54094--54129
15
2.3
16
90
4
56
41
8
16
33
1.78
55215--55244
2
15.0
2
100
0
60
50
0
0
50
1.00
57838--57918
27
3.0
27
83
0
108
35
28
8
27
1.86
58510--59008
165
3.0
165
99
0
989
37
19
16
26
1.93
60101--60165
30
2.1
32
88
5
98
27
15
4
52
1.62
60107--60173
31
2.2
31
86
5
91
31
13
5
49
1.66
61758--61866
22
5.0
21
79
9
112
35
8
18
37
1.81
61757--61918
22
7.3
22
74
8
105
33
8
19
38
1.81
62013--62054
22
1.9
22
85
9
59
30
9
23
35
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
62109--62238
22
5.8
22
77
10
113
39
10
14
35
1.81
62155--62278
22
5.6
22
72
12
71
38
10
15
35
1.82
62573--62676
23
4.6
23
85
3
122
38
9
13
38
1.77
62404--62687
22
13.1
22
72
13
108
40
8
15
35
1.77
62619--62696
22
3.5
23
81
11
74
35
12
14
37
1.84
62695--62769
22
3.4
23
70
15
77
32
6
16
45
1.73
62700--62796
44
2.2
44
100
0
194
30
6
18
44
1.74
62718--62824
22
4.8
22
71
14
85
31
10
16
41
1.82
62700--62855
44
3.5
44
86
7
165
32
9
16
41
1.81
84750--84792
13
3.5
12
84
15
61
62
0
37
0
0.95

Tables:   1

The End!