Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006128.1 Corchorus capsularis cultivar CVL-1 contig06146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1928
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34


Found at i:928 original size:27 final size:26

Alignment explanation


    Indices: 873--935  Score: 81
    Period size: 27  Copynumber: 2.3  Consensus size: 26

        863 TATATAGTAC

                                *   *  
        873 TCCCTCTGTTCCTTTTAATTGTCCCTT
          1 TCCCT-TGTTCCTTTTAATTATCCATT

               *                       
        900 TCCTTTGTTCCTTTTTAATTATCCATT
          1 TCCCTTGTTCC-TTTTAATTATCCATT

                     
        927 TCCCTTGTT
          1 TCCCTTGTT

        936 TTCCAGAAAT


Statistics
Matches: 31,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  26    6  0.19
  27   25  0.81

ACGTcount: A:0.10, C:0.29, G:0.06, T:0.56


Consensus pattern (26 bp):   
TCCCTTGTTCCTTTTAATTATCCATT
Done.