Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006130.1 Corchorus capsularis cultivar CVL-1 contig06148, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32116

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4077--4200
56
2.2
56
81
8
135
46
2
3
47
1.31
4161--4201
7
6.1
7
83
8
50
48
0
2
48
1.14
4107--4177
35
2.0
35
86
8
99
49
0
4
46
1.21
4156--4197
20
2.2
19
91
4
66
45
0
2
52
1.13
4097--4203
56
1.9
56
88
3
162
44
0
4
50
1.22
5326--5356
12
2.5
13
89
10
55
58
6
29
6
1.48
23108--24087
35
27.6
34
77
9
178
25
18
11
44
1.83
23107--24240
36
31.8
35
79
8
953
26
18
11
44
1.83
23143--24240
143
7.7
141
78
9
929
25
18
11
44
1.83
27430--27459
14
2.1
14
100
0
60
30
20
6
43
1.77
27981--28569
22
27.0
22
72
8
213
26
22
23
26
2.00
27983--28573
44
13.6
44
75
6
414
26
23
23
27
2.00
27983--28439
67
7.0
67
74
10
184
27
22
23
26
2.00
28210--28573
22
16.5
22
77
3
284
26
25
23
25
2.00
28212--28464
67
3.8
66
80
4
202
27
25
22
24
2.00
29062--29115
15
3.6
15
78
14
58
35
9
7
48
1.63
30411--30523
53
2.1
53
98
0
217
31
29
22
16
1.96
30891--30934
20
2.1
22
87
8
65
25
6
4
63
1.38
30902--30941
20
2.0
20
85
0
53
17
7
10
65
1.46

Tables:   1

The End!