Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006134.1 Corchorus capsularis cultivar CVL-1 contig06152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9564
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.34


Found at i:231 original size:21 final size:21

Alignment explanation


    Indices: 206--246  Score: 73
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        196 ATCAATAATT

                                 
        206 AATTCATTTTCTCACCAAATA
          1 AATTCATTTTCTCACCAAATA

                          *     
        227 AATTCATTTTCTCATCAAAT
          1 AATTCATTTTCTCACCAAAT

        247 GTATGATAAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41


Consensus pattern (21 bp):   
AATTCATTTTCTCACCAAATA

Found at i:4755 original size:21 final size:21

Alignment explanation


    Indices: 4731--4773  Score: 86
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       4721 GTACTGAAAA

                                 
       4731 TGAACTGGGTTTCTAAAGTGC
          1 TGAACTGGGTTTCTAAAGTGC

                                 
       4752 TGAACTGGGTTTCTAAAGTGC
          1 TGAACTGGGTTTCTAAAGTGC

             
       4773 T
          1 T

       4774 TTAGTTTTGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   22  1.00

ACGTcount: A:0.23, C:0.14, G:0.28, T:0.35


Consensus pattern (21 bp):   
TGAACTGGGTTTCTAAAGTGC
Done.