Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006135.1 Corchorus capsularis cultivar CVL-1 contig06153, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31496

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--684
367
1.9
363
84
4
885
38
15
12
33
1.85
3888--3923
19
1.9
19
88
5
56
66
0
8
25
1.19
8641--9268
323
1.9
324
84
2
834
35
17
13
32
1.90
9103--9785
364
1.9
362
81
5
840
36
16
13
33
1.88
11417--12542
333
3.4
329
80
5
1149
34
15
14
35
1.88
12595--13354
332
2.3
332
81
6
846
35
15
14
34
1.88
12596--13378
333
2.4
330
80
7
784
35
15
15
34
1.88
12596--13607
331
3.1
326
78
7
800
35
16
14
33
1.89
14121--18214
331
12.4
331
75
8
3138
35
17
14
33
1.89
18230--18332
54
1.9
54
84
4
136
55
1
8
33
1.42
31449--31496
2
24.0
2
100
0
96
50
0
50
0
1.00

Tables:   1

The End!