Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006136.1 Corchorus capsularis cultivar CVL-1 contig06154, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  212797

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
435--498
27
2.4
27
94
0
110
20
42
12
25
1.87
12807--12835
2
14.5
2
100
0
58
48
0
0
51
1.00
13938--13967
7
4.4
7
95
4
53
43
10
30
16
1.81
23595--23907
156
2.0
156
99
0
617
30
17
12
39
1.87
38435--38463
2
14.5
2
100
0
58
51
0
0
48
1.00
39765--39798
11
3.0
12
87
12
54
47
0
0
52
1.00
39765--39798
2
18.0
2
88
11
54
47
0
0
52
1.00
43187--43259
32
2.3
32
88
6
105
41
13
5
39
1.68
43685--43733
22
2.2
23
88
3
73
69
16
8
6
1.33
48562--48592
2
15.0
2
93
6
53
48
3
0
48
1.17
52578--52608
2
15.5
2
100
0
62
51
0
0
48
1.00
53551--53578
6
4.7
6
100
0
56
35
17
0
46
1.49
56191--56219
2
14.5
2
100
0
58
51
0
0
48
1.00
79282--79308
2
13.5
2
100
0
54
51
0
0
48
1.00
79896--79922
2
13.5
2
100
0
54
48
0
0
51
1.00
121205--121242
19
2.0
20
84
5
51
15
10
10
63
1.52
156509--156592
42
2.0
42
90
0
132
25
17
13
44
1.85
163810--164013
101
2.0
101
94
0
354
31
18
15
34
1.92
166138--166183
22
2.1
22
87
0
65
13
41
6
39
1.70
166426--166464
20
2.1
18
86
13
53
25
0
0
74
0.82
166505--166565
15
4.4
15
73
21
53
31
1
11
55
1.45
166509--166564
26
2.2
26
83
6
69
32
1
10
55
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
166680--166723
21
2.1
21
86
0
61
38
9
38
13
1.77
167390--167635
136
1.8
136
87
5
372
26
6
15
51
1.67
168354--168418
32
2.0
32
96
0
121
36
15
20
27
1.92
188962--189004
21
2.0
21
90
0
68
27
18
13
39
1.89
199912--199958
23
2.0
23
100
0
94
48
4
17
29
1.65
200239--200306
31
2.3
31
82
10
79
48
17
16
17
1.81
202223--202251
6
4.8
6
100
0
58
34
13
17
34
1.89
202314--202362
24
2.0
25
84
8
64
32
16
30
20
1.94

Tables:   1

The End!