Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006138.1 Corchorus capsularis cultivar CVL-1 contig06156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7615
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33
Found at i:1838 original size:325 final size:320
Alignment explanation
Indices: 71--1988 Score: 1879
Period size: 325 Copynumber: 5.9 Consensus size: 320
61 ATTACAGTTA
* * * * *
71 AAAAACTTACCAGAAAA--TTTTTTCTCAAATTTTTTTTGTCACAGTACTCATAAAAAATCTATA
1 AAAAACTGACCCGAAAATTTTTTTTCTC-AA--TTTTTTGCCACAATACTCATAAAAAATATATA
* * * * *
134 ATACAATGCCAAAAAGATTGCATGATTTTTCACGCTTCTAATATCGTTTTTCATAACTTTTTTTT
63 ATTCAACGCCAAAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATAA--TTTTTTC
*
199 TGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAA-AAATCCTATAATCAA
126 CGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCT-TAATCAA
* * *
263 TTGTGGCTGA-AATTTTGTTAGATGAATATAGATATTTCAAGGAGCCTTTATGTCAAAAACGATG
190 -TGTGGCTGAGAA-TTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATG
* * ** * *
327 CAAAACTTAGTCGAGGCCCTGAAACGCGTTTCTAGTTAAAAACCGTGAT--GGTTAG-TATACAC
253 CAAAACTGAGTCGAGGCCC-GAAACGCGTTTTTAGCCAAAAACCGTGATCAGGTTAGCTA-AAAT
389 TTTCGGC
316 TTTC--C
* * * *
396 TAAAAACTGACCCGAAATTATTTTTTTTCTCAATTTTTCGCCACAATATTCTTAAAAAACCATAT
1 -AAAAACTGACCCGAAA--ATTTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAA-TATAT
* * * * **
461 AATTCGATGCCAAAAAGATTGCAGGATTTTTTACGCTTCTAATATCGTTTTTCATAAAAAATTTT
62 AATTCAACGCCAAAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCAT--AATTTTTT
* * * *
526 CCTAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAATAACCAATCCTTAAGTTC
125 CCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAA--TC
* * *
591 AATGTGGCTGA-AATCTTGTTAGATGAATATAGATATTTCAAGTAGTCATTATGTCAAAAACCAT
188 AATGTGGCTGAGAAT-TGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCAT
* * * * * * *
655 GCTAAATTGTGTCGAGGCCAGGAAATGCGTTTTTAGTCAAAAACCGTGAT--GGTTAG-T-ACAT
252 GCAAAACTGAGTCGAGGCC-CGAAACGCGTTTTTAGCCAAAAACCGTGATCAGGTTAGCTAAAAT
716 GATTTCGGC
316 --TTTC--C
* * *
725 TAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAGTACTCATAAAAATTCTATAAT
1 -AAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAAT
* *
790 TCAACGCCAAAAAGATTGCAGGATTTTTCACGCTTCTAATATCGTATTTC---ATTTTTTCCGAA
65 TCAACGCCAAAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATAATTTTTTCCGAA
* * * *
852 TTTATTTGTAATTAAATCGAAACACGATTCAGATGCTCGTAAAAATAAATCCTTGAATCAATTGT
130 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTT-AATCAA-TGT
917 GGCTGAG-ATTCGGTT--A-G---AT-GATATTTCAAGGAGTCTTTATGTCAAAAAACCATGCAA
193 GGCTGAGAATT-GGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTC-AAAAACCATGCAA
* * * * * **
974 AACTAAGTCGAAGCCCCGAAACGCGATTTTAGGCAAAAACCGTGAT--GGTCAG-TGCACGATTT
256 AACTGAGTCG-AGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATCAGGTTAGCT--AAAATTT
*
1036 TGGCT
318 T--CC
* * * *
1041 AAAAACTGACCCGAAAATTTTTTTTCTCAAGTTTTTGCCACGATACACATAAAAAATCTATAATT
1 AAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATT
* * *
1106 CCACGCCAAAAAGATTAAAGGATTTTTCACGTTTCTAATATCGTTTTTCATAATTTTTTCCGAAT
66 CAACGCCAAAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATAATTTTTTCCGAAT
* *
1171 TTATTTCTAATTAAATCGAAACAAGATTTAGATTCTCGTAAAAACAAATCCTTGAATCCAATGTG
131 TTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTT-AAT-CAATGTG
* * * * * *
1236 GCT-ATGATTTGGTTAGATGAATATAGATGATTT-AAGGAGTATTTGTGCCAACAACTATGCAAA
194 GCTGA-GAATTGGTTAGATGAATATAGAT-ATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAA
* ** * *
1299 ACTGAGTCGAGTCCCCGAAACGCGTTAATA---AAAAACGGTGAT-A-GTTAG-TACACGA-TTT
257 ACTGAGTCGAG-GCCCGAAACGCGTTTTTAGCCAAAAACCGTGATCAGGTTAGCTA-A-AATTTT
1357 CGAC
319 C--C
*
1361 TAAAATCTGACCC-AAAACTTGTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATA
1 -AAAAACTGACCCGAAAA-TT-TTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATA
* * * *
1425 ATTCAACGCTAAAAAAATTTAAGGA-TTTTCACGCTTCTAATATCGTTTTTCAT-ATTTTTTCTG
63 ATTCAACGCCAAAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATAATTTTTTCCG
1488 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTATATCGAAT
128 AATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTA-ATC-AAT
* * * * * * * *
1553 GTGGCTGAGAATTGGTTCGATGAATATAGATATTTGAAGCATTCTTTGTGGCAAAAATCATGGAA
191 GTGGCTGAGAATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAA
* * * * *
1618 AATTGAGCCGGGGCTCCGAAACGCGTTTTTACCCAAAAACCGTGATAACACGATTTCAGCTAAAA
256 AACTGAGTCGAGGC-CCGAAACGCGTTTTTAGCCAAAAACCGTGAT--CA-G-GTT-AGCTAAAA
1683 TTTTCC
315 TTTTCC
* * * * * *
1689 AAAAACAG-CCTCGAAAA-GTTTTTCCTCAATTTTTTGCCACAATTCCCATAAAAAATATATAAC
1 AAAAACTGACC-CGAAAATTTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAAT
* * * * *
1752 TCAACGCCATAATA-ATTGAAGGGTTTTTCACTCTTCTAAGATCGTTTTTCAT-A-TTTTCCCGA
65 TCAACGCCA-AAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATAATTTTTTCCGA
* * * * * *
1814 ATTTATTTCAAATTAAATCGAAACAGGATTAAGATGCTCGTAAAAACAAATCCCTAAATCCAAAG
129 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAAT-CCTTAAT-CAATG
* ** * * *
1879 TGGCTGAGATTTGACTAGATGAATATAGATATTTCAAGGACTATTTATGTCAAAAACCCTGCAAA
192 TGGCTGAGAATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAA
*
1944 ACTGAGTCGAGGCTCCGAAACGCGTTTTTAGCCAAAACCCGTGAT
257 ACTGAGTCGAGGC-CCGAAACGCGTTTTTAGCCAAAAACCGTGAT
1989 GGTTGTTAGT
Statistics
Matches: 1350, Mismatches: 171, Indels: 143
0.81 0.10 0.09
Matches are distributed among these distances:
314 22 0.02
315 157 0.12
316 7 0.01
317 1 0.00
318 82 0.06
319 14 0.01
320 152 0.11
321 130 0.10
322 62 0.05
323 13 0.01
324 37 0.03
325 223 0.17
326 108 0.08
327 66 0.05
328 113 0.08
329 139 0.10
330 22 0.02
331 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (320 bp):
AAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATT
CAACGCCAAAAAGATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATAATTTTTTCCGAAT
TTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAATCAATGTGGC
TGAGAATTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAAACTG
AGTCGAGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATCAGGTTAGCTAAAATTTTCC
Found at i:1950 original size:645 final size:634
Alignment explanation
Indices: 71--1969 Score: 2069
Period size: 645 Copynumber: 2.9 Consensus size: 634
61 ATTACAGTTA
* * *
71 AAAAACTTACCAGAAAA--TTTTTTCTCAAATTTTTTTTGTCACAGTACTCATAAAAAATCTATA
1 AAAAACTGACCCGAAAATTTTTTTTCTC-AA--TTTTTTGCCACAGTACTCATAAAAAATCTATA
* * * *
134 ATACAATGCCAAAAAGATTGCATGATTTTTCACGCTTCTAATATCGTTTTTCATAACTTTTTTTT
63 ATTCAACGCCAAAAAGATTGCAGGATTTTTCACGCTTCTAATATCGTTTTTCAT-A--TTTTTTC
199 TGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAAAAATCC-TATAATCAA
125 TGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAAAAATCCTTAT-ATCAA
* *
263 TTGTGGCTGA-AATTTTGTTAGATGAATATAGATATTTCAAGGAGCCTTTATGTCAAAAACGATG
189 TTGTGGCTGAGAA-TTGGTT-GATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAAC-ATG
* ** * * *
327 CAAAACTTAGTCGAGGCCCTGAAACGCGTTTCTAGTTAAAAACCGTGAT-GGTTAG-TATACACT
251 CAAAA-TTAGTCGAGGCCC-GAAACGCGTTTTTAGCCAAAAACCGTGATCAGTTAGCTA-AAATT
* * *
390 TTCGGCTAAAAACTGACCCGAAATTATTTTTTTTCTCAATTTTTCGCCACAATAT-TCTTAAAAA
313 TTC--C-AAAAACTGACCCGAAA--ATTTTTTTTCTCAATTTTTTGCCACAAT-TCACATAAAAA
* * * * * *
454 ACCATATAATTCGATGCCAAAAAGATTGCAGGATTTTTTACGCTTCTAATATCGTTTTTCATAAA
372 A-TATATAATTCAACGCCAAAAAGATTGAAGGATTTTTCACTCTTCTAATATCGTTTTTCAT---
* * *
519 AAATTTTCCTAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAATAACCAATCCT
433 -AATTTTCCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAACAAATCCT
* * * *
584 TAAGTTCAATGTGGCTGAAATCTTGTTAGATGAATATAGATATTTCAAGTAGTCA-TTATGTCAA
497 TAAATCCAATGTGGCTGAGAT-TTGTTAGATGAATATAGATATTTCAAGGAGT-ATTTATGTCAA
* * * ** * * * *
648 AAACCATGCTAAATTGTGTCGAGGCCAGGAAATGCGTTTTTAGTCAAAAACCGTGATGGTTAGTA
560 AAACCATGCAAAACTGAGTCGAGGCCCCGAAACGCG---TTAATAAAAAACCGTGATAGTTAGTA
* *
713 CATGATTTCGGCT
622 CACGATTTCGACT
*
726 AAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAGTACTCATAAAAATTCTATAATT
1 AAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAGTACTCATAAAAAATCTATAATT
* *
791 CAACGCCAAAAAGATTGCAGGATTTTTCACGCTTCTAATATCGTATTTC--ATTTTTTCCGAATT
66 CAACGCCAAAAAGATTGCAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCTGAATT
* * *
854 TATTTGTAATTAAATCGAAACACGATTCAGATGCTCGTAAAAATAAATCCTTGA-ATCAATTGTG
131 TATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAA-AAATCCTT-ATATCAATTGTG
918 GCTGAG-ATTCGGTT-A-G---AT-GATATTTCAAGGAGTCTTTATGTCAAAAAACCATGCAAAA
194 GCTGAGAATT-GGTTGATGAATATAGATATTTCAAGGAGTCTTTATGTC-AAAAA-CATGCAAAA
* * * * **
976 CTAAGTCGAAGCCCCGAAACGCGATTTTAGGCAAAAACCGTGATGGTCAG-T-GC-ACGATTTTG
256 -TTAGTCG-AGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGA---TCAGTTAGCTAAAATTTT-
* * * * *
1038 GCTAAAAACTGACCCGAAAATTTTTTTTCTCAAGTTTTTGCCACGATACACATAAAAAATCTATA
315 -CCAAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATTCACATAAAAAATATATA
* *
1103 ATTCCACGCCAAAAAGATTAAAGGATTTTTCACGT-TTCTAATATCGTTTTTCATAATTTTTTCC
379 ATTCAACGCCAAAAAGATTGAAGGATTTTTCAC-TCTTCTAATATCGTTTTTCATAA--TTTTCC
* *
1167 GAATTTATTTCTAATTAAATCGAAACAAGATTTAGATTCTCGTAAAAACAAATCCTTGAATCCAA
441 GAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAACAAATCCTTAAATCCAA
* * * *
1232 TGTGGCT-ATGATTTGGTTAGATGAATATAGATGATTT-AAGGAGTATTTGTGCCAACAACTATG
506 TGTGGCTGA-GATTT-GTTAGATGAATATAGAT-ATTTCAAGGAGTATTTATGTCAAAAACCATG
* *
1295 CAAAACTGAGTCGAGTCCCCGAAACGCGTTAATAAAAAACGGTGATAGTTAGTACACGATTTCGA
568 CAAAACTGAGTCGAGGCCCCGAAACGCGTTAATAAAAAACCGTGATAGTTAGTACACGATTTCGA
1360 CT
633 CT
* * *
1362 AAAATCTGACCC-AAAACTTGTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAA
1 AAAAACTGACCCGAAAA-TT-TTTTTTCTCAATTTTTTGCCACAGTACTCATAAAAAATCTATAA
* * **
1426 TTCAACGCTAAAAAAATTTAAGGA-TTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCTGAA
64 TTCAACGCCAAAAAGATTGCAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCTGAA
1490 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTATATCGAA-TG
129 TTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAA-AAATCCTTATATC-AATTG
* * * * * *
1554 TGGCTGAGAATTGGTTCGATGAATATAGATATTTGAAGCATTCTTTGTGGCAAAAATCATGGAAA
192 TGGCTGAGAATTGGTT-GATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAA-CATGCAAA
* * *
1619 ATTGAGCCGGGGCTCCGAAACGCGTTTTTACCCAAAAACCGTGATAACACGATTTCAGCTAAAAT
255 ATT-AGTCGAGGC-CCGAAACGCGTTTTTAGCCAAAAACCGTGAT--CA-G--TT-AGCTAAAAT
* * * *
1684 TTTCCAAAAACAG-CCTCGAAAA-GTTTTTCCTCAATTTTTTGCCACAATTCCCATAAAAAATAT
312 TTTCCAAAAACTGACC-CGAAAATTTTTTTTCTCAATTTTTTGCCACAATTCACATAAAAAATAT
* * * *
1747 ATAACTCAACGCCATAATA-ATTGAAGGGTTTTTCACTCTTCTAAGATCGTTTTTCAT-ATTTTC
376 ATAATTCAACGCCA-AAAAGATTGAAGGATTTTTCACTCTTCTAATATCGTTTTTCATAATTTT-
* * * * *
1810 CCGAATTTATTTCAAATTAAATCGAAACAGGATTAAGATGCTCGTAAAAACAAATCCCTAAATCC
439 CCGAATTTATTTCTAATTAAATCGAAACAAGATTTAGATACTCGTAAAAACAAATCCTTAAATCC
* * * *
1875 AAAGTGGCTGAGATTTGACTAGATGAATATAGATATTTCAAGGACTATTTATGTCAAAAACCCTG
504 AATGTGGCTGAGATTTG-TTAGATGAATATAGATATTTCAAGGAGTATTTATGTCAAAAACCATG
*
1940 CAAAACTGAGTCGAGGCTCCGAAACGCGTT
568 CAAAACTGAGTCGAGGCCCCGAAACGCGTT
1970 TTTAGCCAAA
Statistics
Matches: 1060, Mismatches: 127, Indels: 124
0.81 0.10 0.09
Matches are distributed among these distances:
635 4 0.00
636 71 0.07
637 64 0.06
638 82 0.08
639 135 0.13
640 5 0.00
641 53 0.05
642 33 0.03
643 28 0.03
644 118 0.11
645 164 0.15
646 5 0.00
647 86 0.08
648 19 0.02
649 55 0.05
650 31 0.03
651 2 0.00
652 1 0.00
654 78 0.07
655 15 0.01
656 2 0.00
657 9 0.01
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (634 bp):
AAAAACTGACCCGAAAATTTTTTTTCTCAATTTTTTGCCACAGTACTCATAAAAAATCTATAATT
CAACGCCAAAAAGATTGCAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCTGAATT
TATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAAAAATCCTTATATCAATTGTGGC
TGAGAATTGGTTGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACATGCAAAATTAGT
CGAGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATCAGTTAGCTAAAATTTTCCAAAAACTGA
CCCGAAAATTTTTTTTCTCAATTTTTTGCCACAATTCACATAAAAAATATATAATTCAACGCCAA
AAAGATTGAAGGATTTTTCACTCTTCTAATATCGTTTTTCATAATTTTCCGAATTTATTTCTAAT
TAAATCGAAACAAGATTTAGATACTCGTAAAAACAAATCCTTAAATCCAATGTGGCTGAGATTTG
TTAGATGAATATAGATATTTCAAGGAGTATTTATGTCAAAAACCATGCAAAACTGAGTCGAGGCC
CCGAAACGCGTTAATAAAAAACCGTGATAGTTAGTACACGATTTCGACT
Found at i:2238 original size:264 final size:260
Alignment explanation
Indices: 1765--2275 Score: 652
Period size: 264 Copynumber: 1.9 Consensus size: 260
1755 ACGCCATAAT
* * *
1765 AATTGAAGGGTTTTTCACTCTTCTAAGATCGTTTTTCATATTTTCCCGAATTTATTTCAAATTAA
1 AATTGAAGGGTTTTTCACGCTTCTAAGATCGTTTTCCATATTTTCCCGAATTAATTTCAAATTAA
* * * *
1830 ATCGAAACAGGATTAAGATGCTCGTAAAAACAAATCCCTAAATCCAAAGTGGCTGAGATTTGACT
66 ATCGAAACAAGATTAAGATGCCCGTAAAAACAAATCCCTAAATCCAAAGGGGCTGAGAATTGACT
* * *
1895 AGATGAATATAGATATTTCAAGGACTATTTATGTCAAAAACCCTGCAAAACTGAGTCGAGGCTCC
131 AGATGAATATAGATATTTCAAGGACTATTTACGCCAAAAACCATGCAAAACTGAGTCGAGGCTCC
* * *
1960 GAAACGCGTTTTTAGCCAAAACCCGTGATGGTTGTTAGTACAAGATTTCGGCTAAGAACTGACCA
196 GAAACGCATTTTTAGCCAAAAACCATGAT-G--GTTAGTACAAGATTTCGGCTAAGAACTGACCA
2025 AAA
258 AAA
* *
2028 AATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTT-ATAATT
1 AATTGAAGGGTTTTTCACGCTTCTAAGATCGTTTT-CCATATTTTCCCGAATTAATTTCA-AATT
* * * **
2092 AAAT-GCAAACAAGATTCAGATTCCCGTAAAAACAAATCCTTATAA-CCATTGGGGCTGAGAATT
64 AAATCG-AAACAAGATTAAGATGCCCGTAAAAACAAATCCCTA-AATCCAAAGGGGCTGAGAATT
** * * * * * *
2155 GGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAATTGAGTCGGGG
127 GACTAGATGAATATAGATATTTCAAGGACTATTTACGCCAAAAACCATGCAAAACTGAGTCGAGG
* *
2220 CTCC-ACGACGCATTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTCGGCTAA
192 CTCCGA-AACGCATTTTTAGCCAAAAACCATGATGGTTAGTACAAGATTTCGGCTAA
2276 AATTTTGAAA
Statistics
Matches: 213, Mismatches: 30, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
261 21 0.10
263 37 0.17
264 153 0.72
265 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (260 bp):
AATTGAAGGGTTTTTCACGCTTCTAAGATCGTTTTCCATATTTTCCCGAATTAATTTCAAATTAA
ATCGAAACAAGATTAAGATGCCCGTAAAAACAAATCCCTAAATCCAAAGGGGCTGAGAATTGACT
AGATGAATATAGATATTTCAAGGACTATTTACGCCAAAAACCATGCAAAACTGAGTCGAGGCTCC
GAAACGCATTTTTAGCCAAAAACCATGATGGTTAGTACAAGATTTCGGCTAAGAACTGACCAAAA
Found at i:2573 original size:594 final size:586
Alignment explanation
Indices: 1436--2613 Score: 1507
Period size: 594 Copynumber: 2.0 Consensus size: 586
1426 TTCAACGCTA
* * * * * *
1436 AAAAAATTTAAGGATTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCTGAATTTATTTCTAA
1 AAAAAATTGAAGGATTTTCACGCTTCTAATATCGTTTTCCATATTTTTCCCGAATTAATTTATAA
* * * *
1501 TTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTATATCGAATGTGGCTGAGAATT
66 TTAAATCGAAACAAGATTCAGATACCCGTAAAAACAAATCCTTATAACCAATGGGGCTGAGAATT
* * ** * *
1566 GGTTCGATGAATATAGATATTTGAAGCATTCTTTGTGGCAAAAATCATGGAAAATTGAGCCGGGG
131 GGTTCGATGAATATAGATATTTCAAGCAGTCTTTACGCCAAAAATCATGCAAAATTGAGCCGGGG
*
1631 CTCCGAAACGCGTTTTTACCCAAAAACCGTGATAACACGATTTCAGCTAAAATTTTCCAAAAACA
196 CTCCGAAACGCATTTTTACCCAAAAACCGTGATAACACGATTTCAGCTAAAATTTTCCAAAAACA
**** * *
1696 GCCTCGAAAAGTTTTTCCTCAATTTTTTGCCACAATTCCCATAAAAAATATATAACTCAACGCCA
261 GCCTCGAAAAAAAATTCCTCAATTTTTTGCCACAATACCCATAAAAAATATATAACTAAACGCCA
* * * *
1761 TAATAATTGAAGGGTTTTTCACTCTTCTAAGATCGTTTTTCATATTTTCCCGAATTTATTTCAAA
326 GAATAATTGAAGGATTTTTCACGCTTCTAAGATCGATTTTCATATTTTCCCGAATTTATTTCAAA
*
1826 TTAAATCGAAACAGGATTAAGATGCTCGTAAAAACAAATCCCTAAATCCAAAGTGGCTGAGATTT
391 TTAAATCGAAACAGGATTAAGATGCTCGTAAAAACAAATCCATAAATCCAAAGTGGCTGAGATTT
* * *
1891 GACTAGATGAATATAGATATTTCAAGGACTATTTATGTCAAAAACCCTGCAAAACTGAGTCGAGG
456 GACTAGATGAATATAGATATTTCAAGGACTATTTATGTAAAAAACCATGCAAAACTGAGCCGAGG
* *
1956 CTCCGAAACGCGTTTTTAGCCAAAACCCGTGATGGTTGTTAGTACAAGATTT-CGGCTAAGAACT
521 CTCCGAAACGCGTTTTTAGCCAAAAACCGTGAT-G--GTTAGTACAAGATTTGCGGCTAAAAACT
2020 GACC
583 GACC
*
2024 AAAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCAT-TTTTTCCCGAATTAATTTAT
1 AAAAAATTGAA-GGATTTTCACGCTTCTAATATCGTTTT-CCATATTTTTCCCGAATTAATTTAT
* *
2088 AATTAAAT-GCAAACAAGATTCAGATTCCCGTAAAAACAAATCCTTATAACCATTGGGGCTGAGA
64 AATTAAATCG-AAACAAGATTCAGATACCCGTAAAAACAAATCCTTATAACCAATGGGGCTGAGA
* *
2152 ATTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAATTGAGTCG
128 ATTGGTTCGATGAATATAGATATTTCAAGCAGTCTTTACGCCAAAAATCATGCAAAATTGAGCCG
* * * *
2217 GGGCTCC-ACGACGCATTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTCGGCTAAAATTT
193 GGGCTCCGA-AACGCATTTTTACCCAAAAACC--G-T-GATA--ACACGATTTCAGCTAAAATTT
* * * * *
2281 T-GAAAAAGCTGTCC-CGAAAAAAAATT-CTCAATTTTTTGCCACAATACTCATAAAAAATTTGT
251 TCCAAAAA-CAG-CCTCGAAAAAAAATTCCTCAATTTTTTGCCACAATACCCATAAAAAATATAT
* * * **
2343 AATTAAACGTCAGAA-AGATTGAAGGATTTTTCACGCTTCTAATATCGATTTTCATATTTTTTCG
314 AACTAAACGCCAGAATA-ATTGAAGGATTTTTCACGCTTCTAAGATCGATTTTCATATTTTCCCG
* * *
2407 AATTTATTTCTAATTAAATCGAAATTA-GATTTAA-ATGCTCGTAGAAACAAATCCATAAAT-CA
378 AATTTATTTCAAATTAAATCGAAA-CAGGA-TTAAGATGCTCGTAAAAACAAATCCATAAATCCA
* ** * * * *
2469 ATTA-TGGTTGAGATTTGGTTAGATGTATATCGATATTTCAAGGAGTCTTTATGTAAAAAACCAT
441 A--AGTGGCTGAGATTTGACTAGATGAATATAGATATTTCAAGGACTATTTATGTAAAAAACCAT
* * *
2533 GCAAAACTGTGCCGAGGGTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATT
504 GCAAAACTGAGCCGAGGCTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACAAGATT
2598 TGCGGCTAAAAACTGA
569 TGCGGCTAAAAACTGA
2614 GCTGAAAAAT
Statistics
Matches: 507, Mismatches: 65, Indels: 32
0.84 0.11 0.05
Matches are distributed among these distances:
588 12 0.02
589 181 0.36
590 3 0.01
591 15 0.03
592 14 0.03
593 8 0.02
594 235 0.46
595 37 0.07
596 2 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (586 bp):
AAAAAATTGAAGGATTTTCACGCTTCTAATATCGTTTTCCATATTTTTCCCGAATTAATTTATAA
TTAAATCGAAACAAGATTCAGATACCCGTAAAAACAAATCCTTATAACCAATGGGGCTGAGAATT
GGTTCGATGAATATAGATATTTCAAGCAGTCTTTACGCCAAAAATCATGCAAAATTGAGCCGGGG
CTCCGAAACGCATTTTTACCCAAAAACCGTGATAACACGATTTCAGCTAAAATTTTCCAAAAACA
GCCTCGAAAAAAAATTCCTCAATTTTTTGCCACAATACCCATAAAAAATATATAACTAAACGCCA
GAATAATTGAAGGATTTTTCACGCTTCTAAGATCGATTTTCATATTTTCCCGAATTTATTTCAAA
TTAAATCGAAACAGGATTAAGATGCTCGTAAAAACAAATCCATAAATCCAAAGTGGCTGAGATTT
GACTAGATGAATATAGATATTTCAAGGACTATTTATGTAAAAAACCATGCAAAACTGAGCCGAGG
CTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACAAGATTTGCGGCTAAAAACTGAC
C
Found at i:3739 original size:652 final size:650
Alignment explanation
Indices: 2026--4548 Score: 4044
Period size: 652 Copynumber: 3.9 Consensus size: 650
2016 AACTGACCAA
2026 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAAT
1 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAAT
* *
2091 TAAATGCAAACAAGATTCAGATTCCCGTAAAAACAAATCCTTATAACCATTGGGGCTGAGAATTG
66 TAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAACCATTGGGGCTGAGAATTC
* * * *
2156 GTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAATTGAGTCGGGGC
131 GTTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAA-TGAGCCGAGGC
* *
2221 TCCACGACGCATTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAA
195 TCCAGGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAA
** *
2286 AAGCTGTCCCGAAAA-AAAATTCTCA-ATTTTTTGCCACAATACTCATAAAAAATTTGTAATTAA
260 AAGCTGTCCCGAAAATAATTTTCTCAGATTTTTTGCCACAATACTAATAAAAAATTTGTAATTAA
* * *
2349 ACGTCAGAAAGATTGAAGGATTTTTCACGCTTCTAATATCGATTTTCATATTTTTTCGAATTTAT
325 ACGCCAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCGAATTTAT
* * * * * *
2414 TTCTAATTAAATCGAAATTAGATTTAAATGCTCGTAGAAACAAATCCATAAATCAATTATGGTTG
390 TTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGCTG
* * *
2479 AGATTTGGTTAGATGTATATCGATATTTCAAGGAGTCTTTATGTAAAAAACCATGCAAAACTGTG
455 AGATTTAGTTAGATGTATATCGATATTTCAAGGAGGCTTTATGTAAAAAACCATGCAAAACTGAG
*
2544 CCGAGGGTCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTGCGGCTAAAA
520 CCGAGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTT-CGGCTAAAA
* *
2609 ACTGAGCTGAAAAATTTTTCTCAATTTTTTGTCACAATACTCATAAAAAATATATATAATTCAAT
584 ACTGAACCG-AAAATTTTTCTCAATTTTTTG-CACAATACTCAT-AAAAA-ATATATAATTCAAT
2674 GCCAGT
645 GCCAGT
2680 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCCGAATTAATTTATAA
1 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCA-TTTTTTCCCGAATTAATTTATAA
*
2745 TTAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAACCATTGGGGCAGAGAATT
65 TTAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAACCATTGGGGCTGAGAATT
* * * *
2810 GGTTCGATGAATATAGATATTTAAAGGAGTCTTTGC-AC-TAAATCATGCAAAATGAGCCGGGGC
130 CGTTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAATGAGCCGAGGC
* * *
2873 TCCAGGACACATTTTTAGCCAAAAACCGTGATGGTTAATACACGATTTTGGCTAAAATTTTGAAA
195 TCCAGGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAA
** * * * *
2938 AAATTGAT-CCGAAAAT-TTTTTTTCTGAATTTTTTGCCACAATACTCATAAAAAATTTGTAATT
260 AAGCTG-TCCCGAAAATAATTTTCTCAG-ATTTTTTGCCACAATACTAATAAAAAATTTGTAATT
* * * *
3001 AAACGACA-AAAAAATGAAGGATTTTTCACGCTTCTAATATTGTTTTTCACATTTTTTCCGAATT
323 AAACGCCAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTT-CGAATT
*
3065 TATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTTTGG
387 TATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGG
* * *
3130 CTGAGATTTAGTTAGATATATATCGATATTTCAAGGAGTCTTTATGTAAAAAACCATGCAAAAGT
452 CTGAGATTTAGTTAGATGTATATCGATATTTCAAGGAGGCTTTATGTAAAAAACCATGCAAAACT
* * * * *
3195 GAGCCGAGAGACCGAAACGCGTTTTTAGCCAAGAACCGTGATGGTTAGTACATGATTTTGGCTAA
517 GAGCCGAGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAA
*
3260 AAACTGAACCGAGAAATTTTTCTCAATTTTTTGCAACAATAGTCATAAAAAATATATAATTCAAT
582 AAACTGAACCGA-AAATTTTTCTCAATTTTTTGC-ACAATACTCATAAAAAATATATAATTCAAT
3325 GCCAGT
645 GCCAGT
3331 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAAT
1 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAAT
*
3396 TAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAAACCTTATAACCATTGGGGCTGAGAATTC
66 TAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAACCATTGGGGCTGAGAATTC
*
3461 GTTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAATGAGTCGAGGCT
131 GTTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAATGAGCCGAGGCT
* * * * *
3526 CCAGGACGCATTTTTAGCCAAAAACTGTGATGGTTAGTATACGGTTTCAGCTAAAATTGTGAAAA
196 CCAGGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAAA
*
3591 GGCTGTCCCGGAAAATAATTTTCTCAGA-TTTTTGCCACAATACTAATAAAAAATTTGTAATTAA
261 AGCTGTCCC-GAAAATAATTTTCTCAGATTTTTTGCCACAATACTAATAAAAAATTTGTAATTAA
3655 ACGCCAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCGAATTTAT
325 ACGCCAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCGAATTTAT
3720 TTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGCTG
390 TTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGCTG
* *
3785 AGATTTGGTTAGATGTATATCGATATTTAAAGGAGGCTTTATGTAAAAAACCATGCAAAACTGAG
455 AGATTTAGTTAGATGTATATCGATATTTCAAGGAGGCTTTATGTAAAAAACCATGCAAAACTGAG
* * *
3850 CTGAGGGCCCGAAACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACACGATTTCGGGTAAAAA
520 CCGAGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAA
* * * *
3915 CTTACCCGAAAATTTTTTCTCAATTCTTTGCCACAATACTCATAAAAATTATATAATTCAATGCC
585 CTGAACCGAAAA-TTTTTCTCAATTTTTTG-CACAATACTCATAAAAAATATATAATTCAATGCC
*
3980 AGA
648 AGT
*
3983 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTATCCCATTTTTTCCCGAATTAATTTATAAT
1 AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAAT
4048 TAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAACCATTGGGGCTGAGAATTC
66 TAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAACCATTGGGGCTGAGAATTC
*
4113 GATCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAATGAGCCGAGGCT
131 GTTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAATGAGCCGAGGCT
* * * * * * *
4178 CAAGGACAG-ATTTTTAGTC-AAAACCGTAATTGTTAGTATACGTTTTCGGCTCAAATTTTGAAA
196 CCAGGAC-GCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAA
*
4241 AAGCTGTCCCGGAAAATAATTTTCTCAGA-TTTTTACCACAATACTAATAAAAAATTTGTAATTA
260 AAGCTGTCCC-GAAAATAATTTTCTCAGATTTTTTGCCACAATACTAATAAAAAATTTGTAATTA
4305 AACGCCAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTTCGAATTT
324 AACGCCAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATA-TTTTTTCGAATTT
4370 ATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGC
388 ATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGC
4435 TGAGATTTAGTTAGATGTATATCGATATTTCAAGGAGGCTTTATGT-AAAAACCATGCAAAACTG
453 TGAGATTTAGTTAGATGTATATCGATATTTCAAGGAGGCTTTATGTAAAAAACCATGCAAAACTG
* *
4499 AGCCGAGGGCCCGAAACGCGTTTTTAGCGAAAAACCTTGATGGTTAGTAC
518 AGCCGAGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTAC
4549 CTTCTAATAT
Statistics
Matches: 1741, Mismatches: 110, Indels: 39
0.92 0.06 0.02
Matches are distributed among these distances:
650 121 0.07
651 280 0.16
652 790 0.45
653 158 0.09
654 272 0.16
655 120 0.07
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (650 bp):
AAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAAT
TAAATGCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAACCATTGGGGCTGAGAATTC
GTTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAATGAGCCGAGGCT
CCAGGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAATTTTGAAAA
AGCTGTCCCGAAAATAATTTTCTCAGATTTTTTGCCACAATACTAATAAAAAATTTGTAATTAAA
CGCCAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCGAATTTATT
TCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGCTGA
GATTTAGTTAGATGTATATCGATATTTCAAGGAGGCTTTATGTAAAAAACCATGCAAAACTGAGC
CGAGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAC
TGAACCGAAAATTTTTCTCAATTTTTTGCACAATACTCATAAAAAATATATAATTCAATGCCAGT
Found at i:4318 original size:331 final size:330
Alignment explanation
Indices: 2025--4548 Score: 2531
Period size: 331 Copynumber: 7.7 Consensus size: 330
2015 GAACTGACCA
*
2025 AAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAA
* * *
2090 TTAAAT-GCAAACAAGATTCAGATTCCCGTAAAAACAAATCCTTATAA-CCATTGGGGCTGAGAA
66 TTAAATCG-AAACAAGATTCAGATGCCCGTAAAAACAAATCCATA-AATCAATTGGGGCTGAGAA
* * * * * *
2153 TTGGTTCGATGAATATAGATATTTCAAGGAGTCTTTACGCCAAAAATCATGCAAAATTGAGTCGG
129 TTGGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGA
* * *
2218 GGCTCCACGACGCATTTTTAGCCAAAAACCATGATGGTTAGTACACGATTTCGGCTAAAATTTTG
194 GGCT-CAAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGTTTTCGGCTAAAATTTTG
**
2283 AAAAAGCTGTCCCGAAAA-AAAATTCTCAATTTTTTGCCACAATACTCATAAAAAATTTGTAATT
258 AAAAA-CTGTCCCGAAAATAATTTTCTCAATTTTTTGCCACAATACTCATAAAAAATTTGTAATT
*
2347 AAACGTCAG
322 AAACGCCAG
* ** * *
2356 AAAGATTGAAGGATTTTTCACGCTTCTAATATCGATTTTCATATTTTTT--CGAATTTATTTCTA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCG-TTTTCCCATTTTTTCCCGAATTAATTTATA
** * * * * ** * *
2419 ATTAAATCGAAATTAGATTTAAATGCTCGTAGAAACAAATCCATAAATCAATTATGGTTGAGATT
65 ATTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCATAAATCAATTGGGGCTGAGAAT
* * * * ** *
2484 TGGTTAGATGTATATCGATATTTCAAGGAGTCTTTATGTAAAAAACCATGCAAAACTGTGCCGAG
130 TGGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGAG
* * *
2549 GGTCCGAA-ACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTGCGGC--------T
195 GCT-C-AAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACG-TTTTCGGCTAAAATTTT
** * * * *
2605 -AAAAACTGAGCTGAAAA-ATTTTTCTCAATTTTTTGTCACAATACTCATAAAAAATATATATAA
257 GAAAAACTGTCCCGAAAATAATTTTCTCAATTTTTTGCCACAATACTCATAAAAAAT-T-TGTAA
* *
2668 TTCAATGCCAG
320 TTAAACGCCAG
* *
2679 TAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTTCCCGAATTAATTTATA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTCCCA-TTTTTTCCCGAATTAATTTATA
* * * * *
2744 ATTAAAT-GCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAA-CCATTGGGGCAGAGA
65 ATTAAATCG-AAACAAGATTCAGATGCCCGTAAAAACAAATCCATA-AATCAATTGGGGCTGAGA
* * *
2807 ATTGGTTCGATGAATATAGATATTTAAAGGAGTCTTT--G-CACTAAATCATGCAAAA-TGAGCC
128 ATTGGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCA-AAAACCATGCAAAACTGAGCC
* * * *
2868 GGGGCTCCAGGACACATTTTTAGCCAAAAACCGTGATGGTTAATACACGATTTT-GGCTAAAATT
192 GAGGCT-CAAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACG-TTTTCGGCTAAAATT
* ** *
2932 TTGAAAAAATTGAT-CCGAAAATTTTTTTTCTGAATTTTTTGCCACAATACTCATAAAAAATTTG
255 TTG-AAAAACTG-TCCCGAAAA-TAATTTTCTCAATTTTTTGCCACAATACTCATAAAAAATTTG
*
2996 TAATTAAACGACA-
317 TAATTAAACGCCAG
* * * * *
3009 AAAAAATGAAGGATTTTTCACGCTTCTAATATTGTTTTTCACATTTTTT-CCGAATTTATTTCTA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCG-TTTTCCCATTTTTTCCCGAATTAATTTATA
* * ** *
3073 ATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTTTGGCTGAGATT
65 ATTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCATAAATCAATTGGGGCTGAGAAT
* * * * ** *
3138 TAGTTAGAT-ATATATCGATATTTCAAGGAGTCTTTATGTAAAAAACCATGCAAAAGTGAGCCGA
130 TGGTTAGATGA-ATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGA
* * *
3202 GAGAC-CGAA-ACGCGTTTTTAGCCAAGAACCGTGATGGTTAGTACATGATTTT-GGC-------
194 G-G-CTC-AAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACG-TTTTCGGCTAAAATT
** * * * *
3257 -T-AAAAACTGAACCGAGAAAT--TTTTCTCAATTTTTTGCAACAATAGTCATAAAAAATATATA
255 TTGAAAAACTGTCCCGA-AAATAATTTTCTCAATTTTTTGCCACAATACTCATAAAAAATTTGTA
* *
3318 ATTCAATGCCAG
319 ATTAAACGCCAG
* *
3330 TAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAA
* * * * *
3395 TTAAAT-GCAAACAAGATTCAGATTCCCGTAAAAATAAAACCTTATAA-CCATTGGGGCTGAGAA
66 TTAAATCG-AAACAAGATTCAGATGCCCGTAAAAACAAATCCATA-AATCAATTGGGGCTGAGAA
* * * * *
3458 TTCGTTCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAA-TGAGTCGA
129 TTGGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGA
* * * * * *
3522 GGCTCCAGGACGCATTTTTAGCCAAAAACTGTGATGGTTAGTATACGGTTTCAGCTAAAATTGTG
194 GGCT-CAAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGTTTTCGGCTAAAATTTTG
* *
3587 AAAAGGCTGTCCCGGAAAATAATTTTCTCAGA-TTTTTGCCACAATACTAATAAAAAATTTGTAA
258 AAAA-ACTGTCCC-GAAAATAATTTTCTCA-ATTTTTTGCCACAATACTCATAAAAAATTTGTAA
3651 TTAAACGCCAG
320 TTAAACGCCAG
* * * *
3662 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTT-TCATATTTTT-TCGAATTTATTTCTA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTCCCAT-TTTTTCCCGAATTAATTTATA
* * * *
3725 ATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGCTGAGATT
65 ATTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCATAAATCAATTGGGGCTGAGAAT
* * * * ** *
3790 TGGTTAGATGTATATCGATATTTAAAGGAGGCTTTATGTAAAAAACCATGCAAAACTGAGCTGAG
130 TGGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGA-
* * * * *
3855 GGCCCGAA-ACGCGTTTTTAGTCAAAAACCGTGATGGTTAGTACACGATTTCGG--------GT-
194 GGCTC-AAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGTTTTCGGCTAAAATTTTG
* * *
3910 AAAAACT-TACCCGAAAAT-TTTTTCTCAATTCTTTGCCACAATACTCAT-AAAAATTATATAAT
258 AAAAACTGT-CCCGAAAATAATTTTCTCAATTTTTTGCCACAATACTCATAAAAAATT-TGTAAT
* *
3972 TCAATGCCAG
321 TAAACGCCAG
* *
3982 AAAAATTGAAGGGTTTTTCACGCTTCTAATATCGTTATCCCATTTTTTCCCGAATTAATTTATAA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAA
* * * *
4047 TTAAAT-GCAAACAAGATTCAGATTCCCGTAAAAATAAATCCTTATAA-CCATTGGGGCTGAGAA
66 TTAAATCG-AAACAAGATTCAGATGCCCGTAAAAACAAATCCATA-AATCAATTGGGGCTGAGAA
* * * * *
4110 TTCGATCGATGAATATAGATATTTAAAGGAGTCTTTGCGCCAAAAATCATGCAAAA-TGAGCCGA
129 TTGGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGA
* * * * *
4174 GGCTCAAGGACAG-ATTTTTAGTC-AAAACCGTAATTGTTAGTATACGTTTTCGGCTCAAATTTT
194 GGCTCAA-GAC-GCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGTTTTCGGCTAAAATTTT
* *
4237 GAAAAAGCTGTCCCGGAAAATAATTTTCTCAGA-TTTTTACCACAATACTAATAAAAAATTTGTA
257 GAAAAA-CTGTCCC-GAAAATAATTTTCTCA-ATTTTTTGCCACAATACTCATAAAAAATTTGTA
4301 ATTAAACGCCAG
319 ATTAAACGCCAG
* ** * *
4313 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTT-TCATATTTTTTTCGAATTTATTTCTA
1 AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTCCCAT-TTTTTCCCGAATTAATTTATA
* * * *
4377 ATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTGTGGCTGAGATT
65 ATTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCATAAATCAATTGGGGCTGAGAAT
* * * * * * *
4442 TAGTTAGATGTATATCGATATTTCAAGGAGGCTTTATG-TAAAAACCATGCAAAACTGAGCCGAG
130 TGGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGA-
* * * *
4506 GGCCCGAA-ACGCGTTTTTAGCGAAAAACCTTGATGGTTAGTAC
194 GGCTC-AAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTAC
4549 CTTCTAATAT
Statistics
Matches: 1795, Mismatches: 296, Indels: 203
0.78 0.13 0.09
Matches are distributed among these distances:
318 3 0.00
319 43 0.02
320 200 0.11
321 303 0.17
322 85 0.05
323 70 0.04
324 4 0.00
325 88 0.05
326 2 0.00
327 1 0.00
328 9 0.01
329 104 0.06
330 228 0.13
331 385 0.21
332 225 0.13
333 44 0.02
334 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.33
Consensus pattern (330 bp):
AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTCCCATTTTTTCCCGAATTAATTTATAA
TTAAATCGAAACAAGATTCAGATGCCCGTAAAAACAAATCCATAAATCAATTGGGGCTGAGAATT
GGTTAGATGAATATAGATATTTAAAGGAGTCTTTACGCCAAAAACCATGCAAAACTGAGCCGAGG
CTCAAGACGCATTTTTAGCCAAAAACCGTGATGGTTAGTACACGTTTTCGGCTAAAATTTTGAAA
AACTGTCCCGAAAATAATTTTCTCAATTTTTTGCCACAATACTCATAAAAAATTTGTAATTAAAC
GCCAG
Found at i:7238 original size:322 final size:322
Alignment explanation
Indices: 4773--7599 Score: 3049
Period size: 325 Copynumber: 8.7 Consensus size: 322
4763 AAAATTTTGA
* * * *
4773 AAAAACTAACCCGAAAATTTTTTTCTCAATTTTTTACCACAATACTCATAAAAAATTTATAATTA
1 AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTC
4838 AACG-CAAGAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTTTCCGAA
66 AACGCCAA-AAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATA--TTTTTTCCGAA
* * *
4902 TTTATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAACAAATCCATAAATCAATTTT
128 TTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCAATTGT
* * * ** * * *
4967 AGCTGAGATTTAGTTAGATGTATAGGGTATATTTCAAGGAGTTTTTATGTAAAAAACCACGCAAA
193 GGCTGAGATTTGGTTAGATGAATATAG-ATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAA
*
5032 ACTGA-TCCGAGGGCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTTCG
257 ACTGAGT-CGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGA-TTTCG
5096 GCT
320 GCT
* *
5099 AAAAACTGACCTGAAAA-ATTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTC
1 AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTC
* * ** * * * *
5163 AATGCTAGTAAAATTGAAGGGTTTTTCACGCTTATAATATCGTTTTCCCAT-TTTTTCCCCGAAT
66 AACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTT-TCATATTTTT-TCCGAAT
* * * * *
5227 TAATTTATAATTAAAT-GCAAACAAGATTCAGATTCCCGTAAAAACAAATCCTTATAA-CCATTG
129 TTATTTCTAATTAAATCG-AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTA-AATCAATTG
* * * * * ** * *
5290 GGGCTGAGAATTCG-TATGATGAATATAGAAATTTAAAGGAGTCTTTGCG-C-CAAATCATGCAA
192 TGGCTGAGATTTGGTTA-GATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAA
* * * * * * * * *
5352 AA-TGAGCCGGGGCTCC-AGCACACATTTTTAGCCAAAAACCGTGATGGTTAATATACGATTTTG
256 AACTGAGTCGAGGCCCCGA-AACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCG
5415 GCTCAAAATTTT
320 G--C-------T
* * * * *
5427 GAAAAAGCTAACCCGAAAAATTTTTTTCCTTAATTTTTTGCCACAATACTTATAAAAAATTTGTA
1 -AAAAA-CTGACCCG-AAAATTTTTTT-CTCAATTTTTTGCCACAATACTCATAAAAAATATATA
* *
5492 ATT-AACG--AAAAAAAATGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTATTCCGA
62 ATTCAACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCCGA
* *
5554 ATTTATTTCTAATTAAATCGAAATAAGATTCAGATGCTCGTAAAAAACAAATCCATAAATCAATT
127 ATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGT-AAAAACAAATCCTTAAATCAATT
* * * * *
5619 GTGGCTGAGATTTGGTTAGATGTATATCGATATTTTAAGGAGCCTTTATGTAAAAAACCATGCAA
191 GTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAA
* * ** *
5684 AAGTGAGCCGAGGGACCGAAACACGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
256 AACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGG
5749 CT
321 CT
* * * *
5751 AAAAAATGACCCGAAAATATTTTTCTCAATTTTTTTCCAAAATACTCATAAATATATATATATAT
1 AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACTC----ATA-A-A-A-A-AT
*
5816 ATATAATTCAACAGCAAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTT
57 ATATAATTCAAC-GCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTT
** * *
5881 TTCTTAATTTATTTCTAATTAAATCGAAACAAGATTCAGATACTCGTAAAAACAAATCCTTAATT
121 TTCCGAATTTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAT
* * * *
5946 CAATTGTGGCTGAGAATTGGTTAGATAAATATAGATATTTCAAGGAGTCTCTATGTCAAAAACTA
186 CAATTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCA
* * *
6011 TGCAAAAGTGAGTCGAGGCCCCCGAAACGCGTTCTTAGTCAAAAACCGT-A-----ACGTACACG
251 TGCAAAACTGAGTCGAGG-CCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTA-GTACACG
6070 ATTTCGGCT
314 ATTTCGGCT
*
6079 AAAAACTGACCCGAAAGA-TTTTTTCTCAATTTTTTGCCACAAGACTCATAAAAAATATATAATT
1 AAAAACTGACCCGAAA-ATTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATT
* * * * * * *
6143 CAATGCCAGAAAAATTGAAGGGTTTTTCATGCTTCTAATACCGTTTTCCCT-TTTTTTCCCGAAT
65 CAACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTT-CCGAAT
* * * * * * *
6207 TAATTTATAATTAAAT-GCAAACAAGATTCAGTTGCCCATAAAAACAATTCCTTATATCGAA-TG
129 TTATTTCTAATTAAATCG-AAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATC-AATTG
** * * * * ** * *
6270 TGGCTGTCAATTGGTTCGATGAATATAGATATATCAAGGATTCTTTGCG-CAAAAAATCATGGAA
192 TGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTC-AAAAACCATGCAA
* * * * ** *
6334 AATTGAGTCGGGGCTCCGGAACGCGTTTTTAAACAAAAACCGTGATAACACGATTTCAGCTA-A-
256 AACTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGAT-----G-GTT-AG-TACAC
* *
6397 AATTT-TGC-
313 GATTTCGGCT
* * * * * * *
6405 AAAAACTGACCCGAAAAGTTATTCCTCAATTTTTT-CCAAAAATTCTCATCAAAAATATATAACT
1 AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCC-ACAATACTCATAAAAAATATATAATT
* * * * *
6469 CAACGCCAGAAAAATTGAAGGGTTTTTCACACTTCTAAGATCGTTATTCATA--TTTTCCGGAAT
65 CAACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCC-GAAT
6532 TTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA-TGT
129 TTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAT-CAATTGT
* * * *
6596 GGCTGAGATTTTGTTAGATGAATATAGATATTTTAAGAAGTCTTTATGTTAAAAACCATGCAAAA
193 GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAAA
*
6661 CTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACC---AT-G--A-T----G-GTTCGGCT
258 CTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * * *
6714 AAAAACTGACCCGATAATTTTTTTTCTCAATTTTATTGCCAAAATACTCATAAAAATTCTATAAT
1 AAAAACTGACCCGA-AAATTTTTTTCTCAATTTT-TTGCCACAATACTCATAAAAAATATATAAT
* * * * *
6779 TCAACACCAAAAAGATTGCAGAATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCCAAAT
64 TCAACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCCGAAT
*
6844 TTATTTTTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCCAA-TGT
129 TTATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAAT-CAATTGT
*
6908 GGCTGAGATTTGGTTAGATCAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAAA
193 GGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAAA
* * * ** * *
6973 CTAAGTCAAGGCCCCGAAACGTGTTTTTAGCCAAAAACCGTGATGGTTAAAACACTATTTCGCCT
258 CTGAGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * *
7038 AAAAATTGACCCGAAAATTTTTTTCTCAAATTTTTGCCACAATACTCGTAAAAAATATATAATTC
1 AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTC
*
7103 AACGCCAAAAAGATTGTAA-GATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCCGAATT
66 AACGCCAAAAAAATTG-AAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCCGAATT
* *
7167 TATTTCTAATTAAATCGAAACAAGATTCAAATGCTCGTAAAAACAAATCCTTAAATCAATTGTGA
130 TATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCAATTGTGG
* * * * *
7232 CTGAGATTTGGTTAAATGTATATCGATATTTCAAGGAGTCTTTATGTCAAAAACCTTGCAAAAGT
195 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAAACT
*
7297 GAG-CTGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTAATGGTTAGTACACGATTTCGGCT
260 GAGTC-GAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
* * *
7360 AAAAACTGACCCGAAAAGTTTTTTCCTC-ATATTTTTGCCACAATACTCAGGAAAAAAAATATAA
1 AAAAACTGACCCGAAAA-TTTTTTTCTCAAT-TTTTTGCCACAATACTCA-TAAAAAATATATAA
* * * * * *
7424 TTCAATGCTAAAAAAAATTGAAGGGTTTTTCACGCTTCTAGTATCGTTTTCCCT-TTTTTTCCCG
63 TTCAACGC-CAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTT-CCG
* * * **
7488 AATTAATTTATAATTAAATTC-AAACAAGATTCAGATGCTCGTAAAAACAAATTCTTATTTCGAA
126 AATTTATTTCTAATTAAA-TCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATC-AA
* * * *
7552 -TATGGCTGAGAATTGGTTCGATGAATATAGATATTTCAAGGATTCTTT
189 TTGTGGCTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTT
7600 GCGCCAAAAA
Statistics
Matches: 2097, Mismatches: 302, Indels: 205
0.81 0.12 0.08
Matches are distributed among these distances:
307 2 0.00
308 2 0.00
309 14 0.01
310 16 0.01
311 66 0.03
312 165 0.08
313 6 0.00
315 2 0.00
316 1 0.00
317 33 0.02
318 156 0.07
319 21 0.01
320 64 0.03
321 27 0.01
322 282 0.13
323 74 0.04
324 129 0.06
325 362 0.17
326 121 0.06
327 4 0.00
328 62 0.03
329 59 0.03
330 107 0.05
331 8 0.00
332 110 0.05
333 203 0.10
334 1 0.00
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (322 bp):
AAAAACTGACCCGAAAATTTTTTTCTCAATTTTTTGCCACAATACTCATAAAAAATATATAATTC
AACGCCAAAAAAATTGAAGGATTTTTCACGCTTCTAATATCGTTTTTCATATTTTTTCCGAATTT
ATTTCTAATTAAATCGAAACAAGATTCAGATGCTCGTAAAAACAAATCCTTAAATCAATTGTGGC
TGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTTATGTCAAAAACCATGCAAAACTG
AGTCGAGGCCCCGAAACGCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCGGCT
Done.