Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006140.1 Corchorus capsularis cultivar CVL-1 contig06158, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188578

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10769--10845
31
2.5
31
82
0
91
32
20
10
36
1.87
14581--14640
28
2.1
28
100
0
120
35
6
15
43
1.72
23251--23297
22
2.1
22
88
0
67
31
17
6
44
1.73
25461--25514
9
5.9
9
95
2
90
0
12
42
44
1.43
26736--26788
26
2.2
24
78
18
65
32
15
13
39
1.85
26746--26799
26
2.1
26
100
0
108
25
20
11
42
1.85
27361--27396
2
18.0
2
100
0
72
50
0
0
50
1.00
37797--37838
22
1.9
22
85
0
57
9
28
26
35
1.88
49975--50057
2
41.5
2
100
0
166
50
0
49
0
1.00
56490--56542
2
26.0
2
92
3
88
49
0
3
47
1.19
80086--80280
75
2.6
76
92
1
322
27
29
26
16
1.97
84005--84051
21
2.2
21
88
0
67
48
8
8
34
1.64
93823--93863
2
21.0
2
95
5
75
48
0
0
51
1.00
99236--99338
53
1.9
53
84
0
134
16
21
26
35
1.94
102258--102287
6
5.0
6
95
0
51
16
0
13
70
1.18
131039--131149
59
1.9
58
94
1
195
25
16
15
43
1.86
164061--164298
117
2.0
118
95
2
426
41
11
16
30
1.84
165810--165860
26
2.0
26
100
0
102
23
17
19
39
1.92
172102--172164
27
2.3
27
86
8
83
30
9
17
42
1.81
184022--184051
13
2.2
14
94
5
53
46
0
0
53
1.00
184400--188080
320
11.3
319
77
8
3198
34
14
16
34
1.89
184400--187885
975
3.6
965
78
9
2867
34
14
15
34
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
188086--188116
13
2.4
13
100
0
62
67
0
12
19
1.22
187855--188320
240
1.9
238
92
2
774
33
15
17
33
1.92

Tables:   1

The End!