Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006146.1 Corchorus capsularis cultivar CVL-1 contig06164, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15479
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34


Found at i:295 original size:12 final size:13

Alignment explanation


    Indices: 270--303  Score: 52
    Period size: 12  Copynumber: 2.7  Consensus size: 13

        260 ATAATTATTG

                         
        270 TTTGCTTTATTAA
          1 TTTGCTTTATTAA

                         
        283 TTTGCTTTA-TAA
          1 TTTGCTTTATTAA

                *    
        295 TTTGTTTTA
          1 TTTGCTTTA

        304 GATTTAGATT


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  12   11  0.55
  13    9  0.45

ACGTcount: A:0.21, C:0.06, G:0.09, T:0.65


Consensus pattern (13 bp):   
TTTGCTTTATTAA

Found at i:2515 original size:12 final size:12

Alignment explanation


    Indices: 2498--2528  Score: 62
    Period size: 12  Copynumber: 2.6  Consensus size: 12

       2488 GGCCACAACT

                        
       2498 GGCCATCGCACG
          1 GGCCATCGCACG

                        
       2510 GGCCATCGCACG
          1 GGCCATCGCACG

                   
       2522 GGCCATC
          1 GGCCATC

       2529 CGGCCATTCG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   19  1.00

ACGTcount: A:0.16, C:0.42, G:0.32, T:0.10


Consensus pattern (12 bp):   
GGCCATCGCACG
Done.