Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006150.1 Corchorus capsularis cultivar CVL-1 contig06168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23014

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29--231
68
3.0
68
97
2
381
35
18
14
31
1.91
1482--1595
60
1.9
60
94
0
201
23
22
16
36
1.94
1790--1843
10
5.1
11
74
14
51
0
24
0
75
0.80
1789--1842
18
2.9
19
86
8
67
0
24
0
75
0.80
1903--1943
21
2.0
20
85
4
55
7
24
0
68
1.15
3154--3192
20
1.9
19
85
10
51
28
0
2
69
1.02
3151--3182
16
1.9
17
93
6
57
28
0
0
71
0.86
6127--6181
3
18.3
3
85
7
76
34
1
0
63
1.05
7062--7109
3
15.7
3
79
12
53
41
0
0
58
0.98
7064--7112
12
4.4
11
87
10
64
40
0
0
59
0.98
8419--8443
7
3.6
7
100
0
50
32
32
24
12
1.91
8563--8613
24
2.2
23
82
10
59
78
3
13
3
1.03
11837--11866
1
30.0
1
100
0
60
0
0
0
100
0.00
16886--16936
23
2.5
19
81
12
57
47
0
0
52
1.00

Tables:   1

The End!