Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006151.1 Corchorus capsularis cultivar CVL-1 contig06169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35201

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1010--1059
25
2.0
25
100
0
100
32
32
12
24
1.91
3203--3277
16
4.8
15
79
14
80
10
18
36
34
1.86
3220--3298
32
2.5
32
79
6
81
8
22
35
32
1.85
3893--4027
48
2.8
47
75
12
132
10
20
37
31
1.87
3904--4027
16
7.8
16
72
16
69
10
20
37
30
1.87
3890--4027
32
4.3
32
81
7
140
10
21
36
31
1.86
6793--6837
22
2.0
22
86
0
63
15
28
15
40
1.88
8494--8597
29
3.5
28
70
14
75
34
17
18
29
1.94
8463--8623
60
2.7
61
87
2
213
35
17
19
27
1.94
8523--8624
30
3.4
29
70
14
82
34
19
20
25
1.96
8657--8727
31
2.3
31
92
0
115
22
15
18
43
1.87
9935--9978
22
2.0
22
81
4
52
50
29
6
13
1.68
10951--11197
78
3.2
78
89
3
372
36
10
0
51
1.43
11060--11182
39
3.2
39
62
21
94
38
11
0
50
1.39
11057--11180
40
3.2
40
61
17
96
37
11
0
50
1.38
13582--13607
2
13.0
2
100
0
52
50
0
0
50
1.00
16937--17001
27
2.4
27
84
5
87
44
3
9
43
1.51
18335--18486
80
1.9
80
88
4
209
55
12
11
20
1.67
24565--24615
6
8.2
6
83
12
59
70
15
13
0
1.17
24565--24615
11
4.1
12
76
18
59
70
15
13
0
1.17
27506--27540
2
17.5
2
100
0
70
51
0
0
48
1.00
30468--30548
26
3.2
26
62
22
64
40
12
6
40
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30418--30612
49
3.9
49
90
4
275
41
10
9
38
1.72
31174--31285
55
2.0
55
98
0
215
40
22
13
24
1.89
34439--34700
107
2.5
105
92
2
420
40
9
8
40
1.69

Tables:   1

The End!