Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006154.1 Corchorus capsularis cultivar CVL-1 contig06172, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18697

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3523--3944
35
13.2
30
76
13
234
40
10
17
31
1.83
3566--3799
35
6.8
35
88
3
359
38
12
16
32
1.86
3739--3845
53
2.0
53
87
3
153
40
11
17
30
1.85
3792--3945
31
4.7
31
84
9
150
41
9
19
29
1.82
3930--3956
14
1.9
14
100
0
54
40
0
29
29
1.57
6927--6991
17
4.1
16
75
15
55
72
0
23
4
1.03
7067--7108
12
3.4
12
81
15
50
40
7
11
40
1.69
7054--7109
26
2.2
26
83
6
69
41
7
8
42
1.63
7054--7103
14
3.8
13
81
10
57
46
8
8
38
1.63
7759--7822
7
9.1
7
74
16
53
81
1
17
0
0.77
7756--7820
10
6.4
10
81
8
69
83
1
15
0
0.73
7756--7824
15
5.0
13
77
18
68
81
1
17
0
0.77
7755--7824
27
2.5
29
82
15
85
80
2
17
0
0.84
9339--9450
36
3.1
35
72
7
109
22
17
20
39
1.93
9363--9489
35
3.6
34
73
6
119
18
18
23
38
1.93
9341--9821
71
6.6
71
74
15
293
18
17
26
38
1.92
9653--9821
72
2.3
75
85
8
222
15
16
28
39
1.90
13386--13852
35
13.7
35
90
4
660
39
10
17
32
1.84
13386--13852
171
2.7
171
87
6
668
39
10
17
32
1.84
15715--15748
17
1.9
17
88
5
50
14
2
20
61
1.46

Tables:   1

The End!