Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006155.1 Corchorus capsularis cultivar CVL-1 contig06173, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20817

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2261--2300
18
2.2
18
86
4
53
45
5
20
30
1.72
2884--2919
18
2.1
17
89
5
54
13
13
8
63
1.50
6749--6781
12
2.6
13
85
4
50
60
0
6
33
1.21
15566--15896
52
6.4
52
78
6
280
29
19
5
46
1.71
15667--15896
52
4.5
51
85
3
291
31
17
4
46
1.69
15671--15895
103
2.2
103
83
5
285
32
17
4
45
1.69
15856--16166
40
7.8
40
77
12
311
23
21
4
50
1.67
15856--16166
86
3.9
80
79
10
311
23
21
4
50
1.67
15911--16683
40
18.2
45
70
21
302
24
20
3
52
1.62
15856--16628
199
3.9
198
81
10
837
24
20
3
51
1.63
16148--16195
14
3.4
14
75
16
53
14
20
4
60
1.51
15909--16628
80
9.2
80
81
12
654
24
20
3
52
1.62
16137--16195
29
2.0
29
93
0
100
16
20
5
57
1.58
16169--16628
40
11.5
40
89
1
699
24
20
3
52
1.60

Tables:   1

The End!