Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006157.1 Corchorus capsularis cultivar CVL-1 contig06175, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36428

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2443--2580
44
3.1
44
95
1
240
35
15
7
41
1.75
4098--4187
31
3.1
29
80
15
96
15
22
28
33
1.95
4128--4187
31
2.0
30
93
3
102
16
21
28
33
1.95
10038--10088
23
2.2
23
82
6
68
17
33
9
39
1.83
10048--10094
23
2.0
23
91
0
76
17
29
12
40
1.86
17235--17277
12
3.5
12
81
6
59
37
9
23
30
1.86
19309--19371
30
2.1
30
84
3
81
47
19
7
25
1.76
30527--30598
30
2.3
31
80
4
74
30
13
5
50
1.65
30749--30844
38
2.6
38
80
6
124
12
19
12
55
1.69
30926--31048
44
2.8
44
75
4
122
43
10
12
33
1.76
30903--31047
22
6.6
22
76
4
105
42
11
11
34
1.77
31142--31244
44
2.3
43
81
6
118
40
8
11
38
1.73
31303--31420
22
5.3
21
77
9
92
34
11
15
38
1.82
31317--31419
23
4.6
23
79
12
83
33
10
14
40
1.81
31385--31440
22
2.5
22
85
2
76
33
12
14
39
1.83
31462--31524
22
2.8
22
74
11
56
31
11
17
39
1.85
31470--31558
45
2.0
45
86
0
124
32
8
16
41
1.80
31622--31686
22
3.0
22
76
0
76
38
10
13
36
1.80
31656--31869
62
3.5
62
90
2
340
43
9
12
34
1.74
31711--31869
22
7.6
22
64
25
67
42
10
11
35
1.76
31934--31977
2
22.0
2
95
0
70
45
0
4
50
1.22

Tables:   1

The End!