Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006158.1 Corchorus capsularis cultivar CVL-1 contig06176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38495

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6480--6521
21
2.0
22
90
4
68
19
7
19
54
1.66
15436--15477
14
3.0
14
76
13
50
61
4
11
21
1.48
19229--19260
2
16.0
2
93
0
55
50
0
3
46
1.17
19262--19299
14
2.8
14
92
4
60
68
7
0
23
1.16
22666--22717
27
1.9
27
84
0
68
28
0
34
36
1.58
25223--25263
20
2.0
20
100
0
82
48
24
0
26
1.51
25170--25316
73
2.0
73
100
0
294
46
19
8
26
1.77
25243--25369
53
2.4
53
100
0
254
45
18
9
26
1.79
25159--25408
126
2.0
125
99
0
491
46
18
9
26
1.79
25349--25389
20
2.0
20
100
0
82
48
24
0
26
1.51
28176--28365
87
2.2
87
91
1
310
26
20
21
32
1.97
31328--31530
109
1.9
109
91
4
340
31
10
8
49
1.68
32993--33036
23
2.0
22
86
4
61
34
2
6
56
1.38
33000--33046
22
2.1
23
92
4
78
29
2
10
57
1.44
33255--33576
160
2.0
161
95
1
585
36
13
21
27
1.92
33968--34028
26
2.4
25
83
10
70
68
3
3
24
1.19
34817--34870
17
2.9
17
75
19
54
27
3
0
68
1.06
34826--34864
21
1.9
21
89
5
62
28
5
0
66
1.12
38343--38376
2
17.0
2
100
0
68
50
0
0
50
1.00

Tables:   1

The End!