Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006161.1 Corchorus capsularis cultivar CVL-1 contig06179, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30092
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:3113 original size:13 final size:13
Alignment explanation
Indices: 3091--3129 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
3081 CAAGCTATGC
*
3091 TAAATGTAAATAA
1 TAAATATAAATAA
*
3104 TAAATATAAACAA
1 TAAATATAAATAA
*
3117 TATATATAAATAA
1 TAAATATAAATAA
3130 ATTAGAATCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (13 bp):
TAAATATAAATAA
Found at i:5479 original size:17 final size:17
Alignment explanation
Indices: 5457--5494 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
5447 ATGTCCCGAA
*
5457 CCGAAAAGTACCCGATC
1 CCGAAAAGTACCCGAGC
*
5474 CCG-AAATTACCCGAGC
1 CCGAAAAGTACCCGAGC
5490 CCGAA
1 CCGAA
5495 CCCGATTTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.34, C:0.37, G:0.18, T:0.11
Consensus pattern (17 bp):
CCGAAAAGTACCCGAGC
Found at i:6280 original size:13 final size:13
Alignment explanation
Indices: 6262--6288 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6252 GATAATTATG
6262 TTATATTATATTA
1 TTATATTATATTA
6275 TTATATTATATTA
1 TTATATTATATTA
6288 T
1 T
6289 CAATAAGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATATTATATTA
Found at i:6471 original size:16 final size:15
Alignment explanation
Indices: 6420--6486 Score: 55
Period size: 16 Copynumber: 4.2 Consensus size: 15
6410 GAGCTCGAAA
6420 CCGAAAATACCCAAAC
1 CCGAAAA-ACCCAAAC
**
6436 CCGACAAAA-CCATATT
1 CCGA-AAAACCCA-AAC
6452 CCGAAAATACCCAAAC
1 CCGAAAA-ACCCAAAC
*
6468 CCGAATAAACCCGAAC
1 CCGAA-AAACCCAAAC
6484 CCG
1 CCG
6487 CCCAATTGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
15 6 0.15
16 27 0.66
17 8 0.20
ACGTcount: A:0.45, C:0.37, G:0.09, T:0.09
Consensus pattern (15 bp):
CCGAAAAACCCAAAC
Found at i:6805 original size:2 final size:2
Alignment explanation
Indices: 6798--6839 Score: 61
Period size: 2 Copynumber: 22.0 Consensus size: 2
6788 AGATTTTTGG
*
6798 AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT AT AA AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6838 AT
1 AT
6840 TAATACTTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
1 2 0.06
2 34 0.94
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6819 original size:15 final size:15
Alignment explanation
Indices: 6799--6828 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
6789 GATTTTTGGA
6799 TATATATATATATAT
1 TATATATATATATAT
6814 TATATATATATATAT
1 TATATATATATATAT
6829 AAATATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:7047 original size:2 final size:2
Alignment explanation
Indices: 7042--7074 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
7032 GCATCATACA
*
7042 AT AT AT AT AT AT AT AT GT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7075 CCGGTTAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8203 original size:26 final size:26
Alignment explanation
Indices: 8147--8211 Score: 71
Period size: 26 Copynumber: 2.5 Consensus size: 26
8137 GTTTATGTTT
8147 AATATATAATAATAACTATTTTATTA
1 AATATATAATAATAACTATTTTATTA
* *
8173 TATATATATATATTAA-TATATTT-TTA
1 AATATATA-ATAATAACTAT-TTTATTA
8199 AATATATTAATAA
1 AATATA-TAATAA
8212 ATATTAATTA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (26 bp):
AATATATAATAATAACTATTTTATTA
Found at i:8205 original size:30 final size:31
Alignment explanation
Indices: 8171--8286 Score: 122
Period size: 30 Copynumber: 3.9 Consensus size: 31
8161 ACTATTTTAT
*
8171 TATATATA-TA-TATATTAATATATTTTTAAA
1 TATATATATTATTATATTAAT-TATTTATAAA
* *
8201 TATAT-TAATA-AATATTAATTA--TATAAA
1 TATATATATTATTATATTAATTATTTATAAA
8228 TAT-TATATTATTATATTAA-TATTATATAAA
1 TATATATATTATTATATTAATTATT-TATAAA
*
8258 TAAATATATTATTATATTAATTATTTATA
1 TATATATATTATTATATTAATTATTTATA
8287 TTAAGGGTAA
Statistics
Matches: 73, Mismatches: 5, Indels: 15
0.78 0.05 0.16
Matches are distributed among these distances:
26 1 0.01
27 14 0.19
28 7 0.10
29 4 0.05
30 23 0.32
31 20 0.27
32 4 0.05
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (31 bp):
TATATATATTATTATATTAATTATTTATAAA
Found at i:8211 original size:50 final size:51
Alignment explanation
Indices: 8144--8290 Score: 140
Period size: 50 Copynumber: 2.9 Consensus size: 51
8134 TCAGTTTATG
* * *
8144 TTTAATATATAATAATAACTATTTTATTATATATATA-TATATTAATATATT
1 TTTAATATATAATAATAAATA-TTAATTATATAAATATTATATTAATATATT
* *
8195 TTTAA-ATATATTAATAAATATTAATTATATAAATATTATATTATTATATT
1 TTTAATATATAATAATAAATATTAATTATATAAATATTATATTAATATATT
** * * *
8245 AATATTATAT-A-AATAAATATATTATTATATTAATTATTTATATTAA
1 TTTAATATATAATAATAAATAT-TAATTATA-TAAATA-TTATATTAA
8291 GGGTAATTAT
Statistics
Matches: 79, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
49 22 0.28
50 35 0.44
51 14 0.18
52 8 0.10
ACGTcount: A:0.48, C:0.01, G:0.00, T:0.52
Consensus pattern (51 bp):
TTTAATATATAATAATAAATATTAATTATATAAATATTATATTAATATATT
Found at i:8223 original size:19 final size:20
Alignment explanation
Indices: 8181--8281 Score: 82
Period size: 19 Copynumber: 5.2 Consensus size: 20
8171 TATATATATA
* * *
8181 TATATTAATATATTTTTAAA
1 TATATTAATATAATATTAAT
8201 TATATTAATA-AATATTAAT
1 TATATTAATATAATATTAAT
* *
8220 TATATAAATATTATATT-AT
1 TATATTAATATAATATTAAT
* *
8239 TATATTAATATTATA-TAAA
1 TATATTAATATAATATTAAT
* * *
8258 TAAATATATTATTATATTAAT
1 TATAT-TAATATAATATTAAT
8279 TAT
1 TAT
8282 TTATATTAAG
Statistics
Matches: 66, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
18 1 0.02
19 36 0.55
20 24 0.36
21 5 0.08
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
TATATTAATATAATATTAAT
Found at i:8234 original size:11 final size:11
Alignment explanation
Indices: 8218--8259 Score: 54
Period size: 11 Copynumber: 4.1 Consensus size: 11
8208 ATAAATATTA
8218 ATTATATAAAT
1 ATTATATAAAT
8229 ATTATAT---T
1 ATTATATAAAT
*
8237 ATTATATTAAT
1 ATTATATAAAT
8248 ATTATATAAAT
1 ATTATATAAAT
8259 A
1 A
8260 AATATATTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
8 8 0.30
11 19 0.70
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (11 bp):
ATTATATAAAT
Found at i:8275 original size:8 final size:8
Alignment explanation
Indices: 8167--8285 Score: 59
Period size: 8 Copynumber: 14.5 Consensus size: 8
8157 AATAACTATT
8167 TTATTATA
1 TTATTATA
8175 TATATATATA
1 T-TAT-TATA
*
8185 TTAATATA
1 TTATTATA
* *
8193 TTTTTAAA
1 TTATTATA
8201 TATATTAATAA
1 T-TATT-AT-A
*
8212 ATATTA-A
1 TTATTATA
8219 TTA-TATAA
1 TTATTAT-A
*
8227 ATATTATA
1 TTATTATA
8235 TTATTATA
1 TTATTATA
8243 TTA--ATA
1 TTATTATA
*
8249 TTATATAAA
1 TTAT-TATA
* *
8258 TAAATATA
1 TTATTATA
8266 TTATTATA
1 TTATTATA
8274 TTAATTAT-
1 TT-ATTATA
8282 TTAT
1 TTAT
8286 ATTAAGGGTA
Statistics
Matches: 83, Mismatches: 16, Indels: 25
0.67 0.13 0.20
Matches are distributed among these distances:
6 8 0.10
7 5 0.06
8 38 0.46
9 21 0.25
10 10 0.12
11 1 0.01
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (8 bp):
TTATTATA
Found at i:8665 original size:33 final size:32
Alignment explanation
Indices: 8618--8841 Score: 268
Period size: 33 Copynumber: 6.8 Consensus size: 32
8608 TTTTGCCCTT
*
8618 AGCCACGGCAGAGCCTCCTCACTAGGACGGCTC
1 AGCCACGGCGGAGCCTCC-CACTAGGACGGCTC
** *
8651 AGCCACGGCGGAGCCTCCCCACTAGGGTGCCTC
1 AGCCACGGCGGAGCCT-CCCACTAGGACGGCTC
*
8684 TGCCACGGCGGAGCCGTCCCACTAGGACGGCTC
1 AGCCACGGCGGAGCC-TCCCACTAGGACGGCTC
* *
8717 AGCCACGGTGGAGTCGTCCCACTAGGACGGCTC
1 AGCCACGGCGGAG-CCTCCCACTAGGACGGCTC
* *
8750 AGCCACGGTGGAGCCTCCCTACTAGGGCGGCTC
1 AGCCACGGCGGAGCCTCCC-ACTAGGACGGCTC
* * *
8783 TGCCACGGCGGAGCCGCCCCACTAGGACGGCTT
1 AGCCACGGCGGAGCC-TCCCACTAGGACGGCTC
*
8816 AGCCACGGCGGAGCCGCCCCACTAGG
1 AGCCACGGCGGAGCC-TCCCACTAGG
8842 GCAGCAAGGC
Statistics
Matches: 167, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
32 5 0.03
33 155 0.93
34 7 0.04
ACGTcount: A:0.17, C:0.39, G:0.32, T:0.12
Consensus pattern (32 bp):
AGCCACGGCGGAGCCTCCCACTAGGACGGCTC
Found at i:8789 original size:99 final size:99
Alignment explanation
Indices: 8618--8841 Score: 340
Period size: 99 Copynumber: 2.3 Consensus size: 99
8608 TTTTGCCCTT
* * * *
8618 AGCCACGGCAGAGCCTCCTCACTAGGACGGCTCAGCCACGGCGGAGCCTCCCCACTAGGGTGCCT
1 AGCCACGGCGGAGCCGCCCCACTAGGACGGCTCAGCCACGGCGGAGCCTCCCCACTAGGGCGCCT
*
8683 CTGCCACGGCGGAGCCGTCCCACTAGGACGGCTC
66 CTGCCACGGCGGAGCCGCCCCACTAGGACGGCTC
* * * * * *
8717 AGCCACGGTGGAGTCGTCCCACTAGGACGGCTCAGCCACGGTGGAGCCTCCCTACTAGGGCGGCT
1 AGCCACGGCGGAGCCGCCCCACTAGGACGGCTCAGCCACGGCGGAGCCTCCCCACTAGGGCGCCT
*
8782 CTGCCACGGCGGAGCCGCCCCACTAGGACGGCTT
66 CTGCCACGGCGGAGCCGCCCCACTAGGACGGCTC
8816 AGCCACGGCGGAGCCGCCCCACTAGG
1 AGCCACGGCGGAGCCGCCCCACTAGG
8842 GCAGCAAGGC
Statistics
Matches: 110, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 110 1.00
ACGTcount: A:0.17, C:0.39, G:0.32, T:0.12
Consensus pattern (99 bp):
AGCCACGGCGGAGCCGCCCCACTAGGACGGCTCAGCCACGGCGGAGCCTCCCCACTAGGGCGCCT
CTGCCACGGCGGAGCCGCCCCACTAGGACGGCTC
Found at i:11764 original size:27 final size:24
Alignment explanation
Indices: 11705--11766 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 24
11695 ATCGTTTTAG
11705 TAATTAATTTTATCATAATATATA
1 TAATTAATTTTATCATAATATATA
11729 TAA--AA-TTTAGTCAT-ATCATATTAA
1 TAATTAATTTTA-TCATAAT-ATA-T-A
11753 TAATTAATTTTATC
1 TAATTAATTTTATC
11767 TAAAGAATGT
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
21 6 0.19
22 9 0.29
23 1 0.03
24 7 0.23
26 4 0.13
27 4 0.13
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (24 bp):
TAATTAATTTTATCATAATATATA
Found at i:12820 original size:27 final size:27
Alignment explanation
Indices: 12756--12826 Score: 90
Period size: 27 Copynumber: 2.6 Consensus size: 27
12746 AAGGTCATCC
* *
12756 AGGGGCA-TTTAGGTCATTTTTACATTA
1 AGGGGCATTTTA-GTCATTTGTACACTA
*
12783 AGGGGCATTTTCGTCATTTGTACACTA
1 AGGGGCATTTTAGTCATTTGTACACTA
*
12810 AGGGGGATTTTAGTCAT
1 AGGGGCATTTTAGTCAT
12827 CTTTAAATCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
27 35 0.92
28 3 0.08
ACGTcount: A:0.24, C:0.13, G:0.25, T:0.38
Consensus pattern (27 bp):
AGGGGCATTTTAGTCATTTGTACACTA
Found at i:16562 original size:13 final size:14
Alignment explanation
Indices: 16544--16572 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
16534 ATAATTGGAC
16544 TTTGCATCCAT-CA
1 TTTGCATCCATGCA
16557 TTTGCATCCATGCA
1 TTTGCATCCATGCA
16571 TT
1 TT
16573 AAATAGAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.21, C:0.28, G:0.10, T:0.41
Consensus pattern (14 bp):
TTTGCATCCATGCA
Found at i:16766 original size:21 final size:22
Alignment explanation
Indices: 16721--16769 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
16711 TAAAATTGGT
*
16721 AATCA-AGAGTTTTCAAGATTT
1 AATCAGAGAGTTTTCAAGATTA
16742 AATCAGAG-GTTTTCAA-ATTCA
1 AATCAGAGAGTTTTCAAGATT-A
16763 AATCAGA
1 AATCAGA
16770 TTTAGTGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 3 0.12
21 20 0.80
22 2 0.08
ACGTcount: A:0.41, C:0.12, G:0.14, T:0.33
Consensus pattern (22 bp):
AATCAGAGAGTTTTCAAGATTA
Found at i:20126 original size:20 final size:22
Alignment explanation
Indices: 20103--20146 Score: 74
Period size: 20 Copynumber: 2.1 Consensus size: 22
20093 GTAAAAACAC
20103 ATATAAAAATAGC-A-AAAAAT
1 ATATAAAAATAGCTATAAAAAT
20123 ATATAAAAATAGCTATAAAAAT
1 ATATAAAAATAGCTATAAAAAT
20145 AT
1 AT
20147 GCATAATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 13 0.59
21 1 0.05
22 8 0.36
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (22 bp):
ATATAAAAATAGCTATAAAAAT
Found at i:20139 original size:12 final size:12
Alignment explanation
Indices: 20104--20145 Score: 56
Period size: 10 Copynumber: 3.8 Consensus size: 12
20094 TAAAAACACA
20104 TATAAAAATAGC
1 TATAAAAATAGC
20116 -A-AAAAATA--
1 TATAAAAATAGC
20124 TATAAAAATAGC
1 TATAAAAATAGC
20136 TATAAAAATA
1 TATAAAAATA
20146 TGCATAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
9 1 0.04
10 14 0.54
11 1 0.04
12 10 0.38
ACGTcount: A:0.67, C:0.05, G:0.05, T:0.24
Consensus pattern (12 bp):
TATAAAAATAGC
Found at i:20152 original size:12 final size:11
Alignment explanation
Indices: 20105--20152 Score: 55
Period size: 10 Copynumber: 4.4 Consensus size: 11
20095 AAAAACACAT
20105 ATAAAAATAGC
1 ATAAAAATAGC
*
20116 A-AAAAATA-T
1 ATAAAAATAGC
20125 ATAAAAATAGC
1 ATAAAAATAGC
20136 TATAAAAATATGC
1 -ATAAAAATA-GC
20149 ATAA
1 ATAA
20153 TTTGAGCTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
9 1 0.03
10 14 0.45
11 1 0.03
12 13 0.42
13 2 0.06
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.23
Consensus pattern (11 bp):
ATAAAAATAGC
Found at i:21158 original size:9 final size:10
Alignment explanation
Indices: 21134--21163 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
21124 AAAGAATTAT
21134 TCCAATTTTA
1 TCCAATTTTA
21144 TCCAATTTTA
1 TCCAATTTTA
21154 T-CAATTTTA
1 TCCAATTTTA
21163 T
1 T
21164 GCATATAGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.30, C:0.17, G:0.00, T:0.53
Consensus pattern (10 bp):
TCCAATTTTA
Found at i:21763 original size:10 final size:10
Alignment explanation
Indices: 21744--21795 Score: 59
Period size: 10 Copynumber: 4.8 Consensus size: 10
21734 CGGATGGCTT
21744 GGCATGGGCCG
1 GGCAT-GGCCG
21755 GGCATGGCCG
1 GGCATGGCCG
21765 GGCATGGTGCGCG
1 GGCAT-G-GC-CG
*
21778 GACATGGCCG
1 GGCATGGCCG
21788 GGCATGGC
1 GGCATGGC
21796 ATGGTGGTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
10 19 0.53
11 8 0.22
12 3 0.08
13 6 0.17
ACGTcount: A:0.12, C:0.27, G:0.50, T:0.12
Consensus pattern (10 bp):
GGCATGGCCG
Found at i:21786 original size:23 final size:22
Alignment explanation
Indices: 21723--21794 Score: 87
Period size: 21 Copynumber: 3.3 Consensus size: 22
21713 GTGGTGGCGT
**
21723 GGCATGGTGCGCGG-ATGGCTT
1 GGCATGGTGCGCGGCATGGCCG
21744 GGCATGG-GC-CGGGCATGGCCG
1 GGCATGGTGCGC-GGCATGGCCG
21765 GGCATGGTGCGCGGACATGGCCG
1 GGCATGGTGCGCGG-CATGGCCG
21788 GGCATGG
1 GGCATGG
21795 CATGGTGGTG
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
19 1 0.02
20 4 0.09
21 19 0.43
22 4 0.09
23 16 0.36
ACGTcount: A:0.11, C:0.24, G:0.50, T:0.15
Consensus pattern (22 bp):
GGCATGGTGCGCGGCATGGCCG
Found at i:27792 original size:27 final size:27
Alignment explanation
Indices: 27761--27842 Score: 128
Period size: 27 Copynumber: 3.0 Consensus size: 27
27751 CAGGCCCACG
27761 TTCTTGTCTCATATCCTTTTGATTCTT
1 TTCTTGTCTCATATCCTTTTGATTCTT
*
27788 TTCTTATCTCATATCCTTTTGATTCTT
1 TTCTTGTCTCATATCCTTTTGATTCTT
* * *
27815 TTCTTGTCTCATATTCTATTAATTCTT
1 TTCTTGTCTCATATCCTTTTGATTCTT
27842 T
1 T
27843 ATTCCTATCC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.15, C:0.21, G:0.05, T:0.60
Consensus pattern (27 bp):
TTCTTGTCTCATATCCTTTTGATTCTT
Done.